Experiment: L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0274 and Sama_0275 are separated by 316 nucleotides
Sama_0274: Sama_0274 - LysR family transcriptional regulator (RefSeq), at 315,340 to 316,263
_0274
Sama_0275: Sama_0275 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 316,580 to 317,083
_0275
Position (kb) 316
317
318 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 315.580 kb on - strand, within Sama_0274 at 315.580 kb on - strand, within Sama_0274 at 315.580 kb on - strand, within Sama_0274 at 315.580 kb on - strand, within Sama_0274 at 315.584 kb on + strand, within Sama_0274 at 315.584 kb on + strand, within Sama_0274 at 315.584 kb on + strand, within Sama_0274 at 315.584 kb on + strand, within Sama_0274 at 315.584 kb on + strand, within Sama_0274 at 315.584 kb on + strand, within Sama_0274 at 315.584 kb on + strand, within Sama_0274 at 315.584 kb on + strand, within Sama_0274 at 315.585 kb on - strand, within Sama_0274 at 315.585 kb on - strand, within Sama_0274 at 315.662 kb on + strand, within Sama_0274 at 315.662 kb on + strand, within Sama_0274 at 315.685 kb on + strand, within Sama_0274 at 315.685 kb on + strand, within Sama_0274 at 315.685 kb on + strand, within Sama_0274 at 315.686 kb on - strand, within Sama_0274 at 315.686 kb on - strand, within Sama_0274 at 315.686 kb on - strand, within Sama_0274 at 315.712 kb on + strand, within Sama_0274 at 315.713 kb on - strand, within Sama_0274 at 315.713 kb on - strand, within Sama_0274 at 315.713 kb on - strand, within Sama_0274 at 315.787 kb on + strand, within Sama_0274 at 315.787 kb on + strand, within Sama_0274 at 315.787 kb on + strand, within Sama_0274 at 315.788 kb on - strand, within Sama_0274 at 315.788 kb on - strand, within Sama_0274 at 315.788 kb on - strand, within Sama_0274 at 315.788 kb on - strand, within Sama_0274 at 315.788 kb on - strand, within Sama_0274 at 315.831 kb on + strand, within Sama_0274 at 315.847 kb on - strand, within Sama_0274 at 315.898 kb on - strand, within Sama_0274 at 315.898 kb on - strand, within Sama_0274 at 315.898 kb on - strand, within Sama_0274 at 315.898 kb on - strand, within Sama_0274 at 315.906 kb on + strand, within Sama_0274 at 315.907 kb on - strand, within Sama_0274 at 315.947 kb on + strand, within Sama_0274 at 316.061 kb on + strand, within Sama_0274 at 316.061 kb on + strand, within Sama_0274 at 316.061 kb on + strand, within Sama_0274 at 316.062 kb on - strand, within Sama_0274 at 316.067 kb on + strand, within Sama_0274 at 316.067 kb on + strand, within Sama_0274 at 316.149 kb on + strand, within Sama_0274 at 316.149 kb on + strand, within Sama_0274 at 316.150 kb on - strand, within Sama_0274 at 316.150 kb on - strand, within Sama_0274 at 316.182 kb on + strand at 316.182 kb on + strand at 316.183 kb on - strand at 316.206 kb on + strand at 316.233 kb on + strand at 316.233 kb on + strand at 316.233 kb on + strand at 316.243 kb on + strand at 316.284 kb on - strand at 316.284 kb on - strand at 316.284 kb on - strand at 316.314 kb on + strand at 316.314 kb on + strand at 316.314 kb on + strand at 316.314 kb on + strand at 316.315 kb on - strand at 316.315 kb on - strand at 316.315 kb on - strand at 316.315 kb on - strand at 316.315 kb on - strand at 316.315 kb on - strand at 316.322 kb on + strand at 316.323 kb on - strand at 316.323 kb on - strand at 316.330 kb on + strand at 316.330 kb on + strand at 316.330 kb on + strand at 316.331 kb on - strand at 316.331 kb on - strand at 316.331 kb on - strand at 316.350 kb on + strand at 316.350 kb on + strand at 316.350 kb on + strand at 316.350 kb on + strand at 316.350 kb on + strand at 316.437 kb on + strand at 316.438 kb on - strand at 316.438 kb on - strand at 316.438 kb on - strand at 316.438 kb on - strand at 316.439 kb on + strand at 316.439 kb on + strand at 316.471 kb on + strand at 316.471 kb on + strand at 316.471 kb on + strand at 316.472 kb on - strand at 316.472 kb on - strand at 316.567 kb on + strand at 316.567 kb on + strand at 316.567 kb on + strand at 316.568 kb on - strand at 316.568 kb on - strand at 316.568 kb on - strand at 316.568 kb on - strand at 316.568 kb on - strand at 316.589 kb on + strand at 316.589 kb on + strand at 316.589 kb on + strand at 316.589 kb on + strand at 316.589 kb on + strand at 316.589 kb on + strand at 316.590 kb on - strand at 316.590 kb on - strand at 316.590 kb on - strand at 316.590 kb on - strand at 316.590 kb on - strand at 316.590 kb on - strand at 316.590 kb on - strand at 316.616 kb on - strand at 316.616 kb on - strand at 316.616 kb on - strand at 316.616 kb on - strand at 316.616 kb on - strand at 316.652 kb on + strand, within Sama_0275 at 316.652 kb on + strand, within Sama_0275 at 316.652 kb on + strand, within Sama_0275 at 316.653 kb on - strand, within Sama_0275 at 316.662 kb on + strand, within Sama_0275 at 316.673 kb on + strand, within Sama_0275 at 316.673 kb on + strand, within Sama_0275 at 316.674 kb on - strand, within Sama_0275 at 316.732 kb on + strand, within Sama_0275 at 316.732 kb on + strand, within Sama_0275 at 316.732 kb on + strand, within Sama_0275 at 316.733 kb on - strand, within Sama_0275 at 316.795 kb on + strand, within Sama_0275 at 316.854 kb on - strand, within Sama_0275 at 316.867 kb on + strand, within Sama_0275 at 316.936 kb on + strand, within Sama_0275 at 316.964 kb on + strand, within Sama_0275 at 316.964 kb on + strand, within Sama_0275 at 316.964 kb on + strand, within Sama_0275 at 316.964 kb on + strand, within Sama_0275 at 316.965 kb on - strand, within Sama_0275 at 316.965 kb on - strand, within Sama_0275 at 316.965 kb on - strand, within Sama_0275 at 316.965 kb on - strand, within Sama_0275 at 316.997 kb on + strand, within Sama_0275 at 316.997 kb on + strand, within Sama_0275 at 316.998 kb on - strand, within Sama_0275 at 316.998 kb on - strand, within Sama_0275 at 317.020 kb on + strand, within Sama_0275 at 317.033 kb on + strand at 317.034 kb on - strand at 317.034 kb on - strand at 317.046 kb on - strand at 317.046 kb on - strand at 317.046 kb on - strand at 317.046 kb on - strand at 317.058 kb on - strand at 317.072 kb on + strand at 317.072 kb on + strand at 317.072 kb on + strand at 317.072 kb on + strand at 317.072 kb on + strand at 317.072 kb on + strand at 317.072 kb on + strand at 317.072 kb on + strand at 317.072 kb on + strand at 317.072 kb on + strand at 317.073 kb on - strand at 317.073 kb on - strand at 317.074 kb on + strand at 317.075 kb on - strand at 317.075 kb on - strand at 317.075 kb on - strand at 317.205 kb on + strand at 317.205 kb on + strand at 317.206 kb on - strand at 317.206 kb on - strand at 317.347 kb on + strand at 317.348 kb on - strand at 317.492 kb on + strand at 317.493 kb on - strand at 317.493 kb on - strand at 317.493 kb on - strand at 317.493 kb on - strand at 317.615 kb on - strand at 317.615 kb on - strand at 317.615 kb on - strand at 317.640 kb on + strand at 317.640 kb on + strand at 317.640 kb on + strand at 317.641 kb on - strand at 317.646 kb on + strand at 317.646 kb on + strand at 317.646 kb on + strand at 317.646 kb on + strand at 317.646 kb on + strand at 317.646 kb on + strand at 317.647 kb on - strand at 317.647 kb on - strand at 317.647 kb on - strand at 317.649 kb on + strand at 317.650 kb on - strand at 317.650 kb on - strand at 317.656 kb on + strand at 317.656 kb on + strand at 317.657 kb on - strand at 317.686 kb on - strand at 317.703 kb on - strand at 317.703 kb on - strand at 317.703 kb on - strand at 317.703 kb on - strand at 317.703 kb on - strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.720 kb on + strand at 317.720 kb on + strand at 317.721 kb on - strand at 317.721 kb on - strand at 317.721 kb on - strand at 317.722 kb on + strand at 317.723 kb on - strand at 317.723 kb on - strand at 317.757 kb on - strand at 317.790 kb on - strand at 317.814 kb on + strand at 317.814 kb on + strand at 317.814 kb on + strand at 317.814 kb on + strand at 317.814 kb on + strand at 317.814 kb on + strand at 317.815 kb on - strand at 317.815 kb on - strand at 317.815 kb on - strand at 317.815 kb on - strand at 317.815 kb on - strand at 317.815 kb on - strand at 317.815 kb on - strand at 317.827 kb on + strand at 317.827 kb on + strand at 317.828 kb on - strand at 317.828 kb on - strand at 317.828 kb on - strand at 317.828 kb on - strand at 317.828 kb on - strand at 317.828 kb on - strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.838 kb on + strand at 317.838 kb on + strand at 317.838 kb on + strand at 317.838 kb on + strand at 317.838 kb on + strand at 317.838 kb on + strand at 317.838 kb on + strand at 317.838 kb on + strand at 317.839 kb on - strand at 317.839 kb on - strand at 317.839 kb on - strand at 317.839 kb on - strand at 317.839 kb on - strand at 317.839 kb on - strand at 317.839 kb on - strand at 317.839 kb on - strand at 317.839 kb on - strand at 317.939 kb on - strand at 317.968 kb on + strand at 317.968 kb on + strand at 317.968 kb on + strand at 317.968 kb on + strand at 317.968 kb on + strand at 317.969 kb on - strand at 317.969 kb on - strand at 317.969 kb on - strand at 317.969 kb on - strand at 317.969 kb on - strand at 317.996 kb on + strand at 317.996 kb on + strand at 317.996 kb on + strand at 317.997 kb on - strand at 317.997 kb on - strand at 317.997 kb on - strand at 317.997 kb on - strand at 317.998 kb on + strand at 317.998 kb on + strand at 317.998 kb on + strand at 317.998 kb on + strand at 317.998 kb on + strand at 317.998 kb on + strand at 317.998 kb on + strand at 317.998 kb on + strand at 317.998 kb on + strand at 317.998 kb on + strand at 317.998 kb on + strand at 317.999 kb on - strand at 317.999 kb on - strand at 317.999 kb on - strand at 317.999 kb on - strand at 317.999 kb on - strand at 317.999 kb on - strand at 317.999 kb on - strand at 317.999 kb on - strand at 317.999 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate remove 315,580 - Sama_0274 0.26 -0.4 315,580 - Sama_0274 0.26 -0.1 315,580 - Sama_0274 0.26 +1.1 315,580 - Sama_0274 0.26 +0.5 315,584 + Sama_0274 0.26 +1.0 315,584 + Sama_0274 0.26 +1.6 315,584 + Sama_0274 0.26 +0.3 315,584 + Sama_0274 0.26 +0.8 315,584 + Sama_0274 0.26 +0.5 315,584 + Sama_0274 0.26 -0.6 315,584 + Sama_0274 0.26 -1.4 315,584 + Sama_0274 0.26 +1.2 315,585 - Sama_0274 0.27 -1.0 315,585 - Sama_0274 0.27 -0.5 315,662 + Sama_0274 0.35 -0.7 315,662 + Sama_0274 0.35 +0.4 315,685 + Sama_0274 0.37 +0.2 315,685 + Sama_0274 0.37 -0.2 315,685 + Sama_0274 0.37 +1.1 315,686 - Sama_0274 0.37 -1.5 315,686 - Sama_0274 0.37 -2.3 315,686 - Sama_0274 0.37 +0.1 315,712 + Sama_0274 0.40 -0.3 315,713 - Sama_0274 0.40 +0.7 315,713 - Sama_0274 0.40 -0.0 315,713 - Sama_0274 0.40 +0.8 315,787 + Sama_0274 0.48 +0.0 315,787 + Sama_0274 0.48 -0.3 315,787 + Sama_0274 0.48 -1.5 315,788 - Sama_0274 0.48 -0.5 315,788 - Sama_0274 0.48 +1.0 315,788 - Sama_0274 0.48 -0.9 315,788 - Sama_0274 0.48 -0.3 315,788 - Sama_0274 0.48 +1.2 315,831 + Sama_0274 0.53 +0.2 315,847 - Sama_0274 0.55 +0.7 315,898 - Sama_0274 0.60 -2.1 315,898 - Sama_0274 0.60 -2.7 315,898 - Sama_0274 0.60 +0.7 315,898 - Sama_0274 0.60 +1.6 315,906 + Sama_0274 0.61 +0.4 315,907 - Sama_0274 0.61 -2.0 315,947 + Sama_0274 0.66 -1.4 316,061 + Sama_0274 0.78 -1.4 316,061 + Sama_0274 0.78 -2.5 316,061 + Sama_0274 0.78 -1.2 316,062 - Sama_0274 0.78 -2.6 316,067 + Sama_0274 0.79 +1.1 316,067 + Sama_0274 0.79 +0.5 316,149 + Sama_0274 0.88 +2.3 316,149 + Sama_0274 0.88 -0.0 316,150 - Sama_0274 0.88 +2.1 316,150 - Sama_0274 0.88 -0.2 316,182 + -0.2 316,182 + +1.8 316,183 - +1.7 316,206 + -0.9 316,233 + -0.4 316,233 + -1.1 316,233 + -1.0 316,243 + -1.5 316,284 - -0.1 316,284 - -0.4 316,284 - +1.1 316,314 + +0.2 316,314 + +0.8 316,314 + -1.1 316,314 + -0.4 316,315 - +0.1 316,315 - +0.5 316,315 - -0.6 316,315 - +1.4 316,315 - -1.0 316,315 - +0.6 316,322 + -0.6 316,323 - -0.4 316,323 - -1.4 316,330 + -2.5 316,330 + -0.5 316,330 + -1.7 316,331 - -0.3 316,331 - -1.1 316,331 - +0.2 316,350 + +2.6 316,350 + +0.5 316,350 + -0.8 316,350 + -1.0 316,350 + +0.8 316,437 + +0.2 316,438 - +0.6 316,438 - -0.5 316,438 - -1.5 316,438 - -0.4 316,439 + -1.0 316,439 + -1.4 316,471 + -1.8 316,471 + -1.7 316,471 + -1.9 316,472 - -0.0 316,472 - -1.0 316,567 + -0.9 316,567 + -0.7 316,567 + -1.0 316,568 - +0.9 316,568 - -1.8 316,568 - -1.8 316,568 - -2.2 316,568 - +0.3 316,589 + +0.1 316,589 + -0.2 316,589 + -0.5 316,589 + +2.1 316,589 + -0.0 316,589 + +1.5 316,590 - +0.4 316,590 - -2.4 316,590 - +2.1 316,590 - +1.8 316,590 - -1.5 316,590 - -0.2 316,590 - -0.0 316,616 - -1.0 316,616 - -0.6 316,616 - -1.1 316,616 - -0.9 316,616 - +0.8 316,652 + Sama_0275 0.14 +2.5 316,652 + Sama_0275 0.14 -1.0 316,652 + Sama_0275 0.14 +0.8 316,653 - Sama_0275 0.14 +0.0 316,662 + Sama_0275 0.16 +0.3 316,673 + Sama_0275 0.18 +0.2 316,673 + Sama_0275 0.18 -1.0 316,674 - Sama_0275 0.19 -0.8 316,732 + Sama_0275 0.30 -2.0 316,732 + Sama_0275 0.30 -0.5 316,732 + Sama_0275 0.30 -0.2 316,733 - Sama_0275 0.30 -1.4 316,795 + Sama_0275 0.43 -3.3 316,854 - Sama_0275 0.54 -0.1 316,867 + Sama_0275 0.57 +0.8 316,936 + Sama_0275 0.71 +0.8 316,964 + Sama_0275 0.76 -0.5 316,964 + Sama_0275 0.76 -0.3 316,964 + Sama_0275 0.76 -0.4 316,964 + Sama_0275 0.76 -2.0 316,965 - Sama_0275 0.76 +0.9 316,965 - Sama_0275 0.76 -1.6 316,965 - Sama_0275 0.76 -1.6 316,965 - Sama_0275 0.76 -2.1 316,997 + Sama_0275 0.83 -0.9 316,997 + Sama_0275 0.83 +0.1 316,998 - Sama_0275 0.83 -1.4 316,998 - Sama_0275 0.83 -1.0 317,020 + Sama_0275 0.87 -0.1 317,033 + -0.3 317,034 - +0.2 317,034 - -1.2 317,046 - -0.2 317,046 - +0.9 317,046 - +0.1 317,046 - +0.3 317,058 - +0.3 317,072 + +0.2 317,072 + -0.1 317,072 + -0.2 317,072 + -1.0 317,072 + -1.0 317,072 + -0.4 317,072 + +0.1 317,072 + -0.3 317,072 + +0.1 317,072 + -2.2 317,073 - +1.8 317,073 - +0.7 317,074 + +0.4 317,075 - +0.7 317,075 - -0.2 317,075 - +2.4 317,205 + -0.5 317,205 + +0.2 317,206 - +1.2 317,206 - -1.1 317,347 + +2.0 317,348 - -0.7 317,492 + +0.3 317,493 - -1.9 317,493 - +0.5 317,493 - +0.9 317,493 - +0.4 317,615 - +0.7 317,615 - -1.8 317,615 - +0.8 317,640 + -0.8 317,640 + -0.1 317,640 + +0.8 317,641 - -0.7 317,646 + +0.2 317,646 + +1.8 317,646 + -0.8 317,646 + +0.3 317,646 + +1.2 317,646 + -1.0 317,647 - +0.4 317,647 - +1.4 317,647 - -0.8 317,649 + +0.1 317,650 - +1.8 317,650 - -1.0 317,656 + -1.0 317,656 + +0.0 317,657 - -0.2 317,686 - -0.2 317,703 - -0.2 317,703 - -1.4 317,703 - -0.7 317,703 - -0.7 317,703 - -3.0 317,704 + -0.1 317,704 + -0.6 317,704 + -0.5 317,704 + +1.1 317,704 + -1.0 317,704 + +1.8 317,704 + +2.5 317,704 + -1.2 317,704 + -1.0 317,704 + -0.5 317,704 + +1.3 317,704 + +0.5 317,704 + +0.3 317,704 + -0.8 317,704 + -0.8 317,704 + -1.2 317,704 + -0.2 317,705 - -1.1 317,705 - -0.3 317,705 - -1.9 317,705 - +0.8 317,705 - +0.9 317,705 - -1.4 317,705 - -0.8 317,705 - +1.7 317,705 - +1.7 317,705 - -2.0 317,705 - -0.5 317,705 - -0.8 317,705 - -0.5 317,705 - +0.7 317,720 + +0.2 317,720 + +0.7 317,721 - -0.0 317,721 - -2.3 317,721 - +1.0 317,722 + -0.6 317,723 - +0.6 317,723 - -2.5 317,757 - +1.7 317,790 - -1.5 317,814 + -0.4 317,814 + -0.4 317,814 + +0.6 317,814 + -0.4 317,814 + +0.5 317,814 + +0.4 317,815 - +0.6 317,815 - -1.5 317,815 - -0.1 317,815 - +0.4 317,815 - +0.6 317,815 - +0.6 317,815 - +1.0 317,827 + -0.3 317,827 + -0.4 317,828 - -0.9 317,828 - +1.1 317,828 - +1.2 317,828 - +0.5 317,828 - +2.3 317,828 - +0.5 317,834 + +2.3 317,834 + -0.1 317,834 + -0.9 317,834 + -0.4 317,834 + -1.0 317,834 + -0.5 317,834 + +0.5 317,834 + +0.3 317,834 + +0.7 317,834 + +1.2 317,834 + -1.4 317,834 + -1.9 317,834 + +0.2 317,834 + +1.4 317,834 + +1.0 317,835 - -1.2 317,835 - -2.9 317,835 - +2.5 317,835 - -0.8 317,835 - +0.5 317,835 - -1.4 317,835 - -1.9 317,835 - +1.2 317,835 - +0.4 317,835 - +1.9 317,835 - -0.5 317,835 - +0.5 317,835 - +0.0 317,835 - +0.3 317,835 - -1.1 317,835 - +1.7 317,835 - +0.2 317,835 - -1.8 317,835 - -0.1 317,835 - -1.9 317,835 - -0.2 317,838 + +1.4 317,838 + -0.2 317,838 + -0.8 317,838 + +0.2 317,838 + -1.0 317,838 + +1.1 317,838 + +0.6 317,838 + -1.8 317,839 - -2.2 317,839 - -0.2 317,839 - +0.2 317,839 - +1.5 317,839 - -1.0 317,839 - -0.9 317,839 - -1.2 317,839 - -1.7 317,839 - +0.3 317,939 - +0.3 317,968 + +0.4 317,968 + +0.0 317,968 + +2.0 317,968 + +3.1 317,968 + +0.8 317,969 - -0.1 317,969 - +0.1 317,969 - -0.0 317,969 - +0.4 317,969 - +0.8 317,996 + -0.6 317,996 + +0.7 317,996 + +1.8 317,997 - +2.2 317,997 - -1.4 317,997 - -0.8 317,997 - +0.2 317,998 + -0.8 317,998 + -0.9 317,998 + +0.4 317,998 + +0.1 317,998 + +0.3 317,998 + -1.2 317,998 + -0.4 317,998 + -1.7 317,998 + -0.9 317,998 + -0.1 317,998 + +0.3 317,999 - -2.4 317,999 - +1.2 317,999 - +2.4 317,999 - +1.2 317,999 - +0.5 317,999 - +0.5 317,999 - +0.6 317,999 - -0.2 317,999 - -0.1
Or see this region's nucleotide sequence