Strain Fitness in Shewanella amazonensis SB2B around Sama_0094

Experiment: L-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lactate
107,450	-				+0.4
107,501	+				+0.1
107,501	+				-1.2
107,502	-				+1.8
107,555	+				-1.3
107,556	-				+1.5
107,704	+				+3.0
107,704	+				-0.4
107,705	-				-2.1
107,725	+				-2.6
107,725	+				-0.3
107,725	+				-0.6
107,725	+				-2.0
107,725	+				-0.2
107,725	+				+0.8
107,725	+				-2.1
107,725	+				-1.3
107,725	+				-0.2
107,725	+				+1.3
107,726	-				-0.6
107,726	-				+1.3
107,726	-				-1.0
107,726	-				+1.1
107,756	+				-1.8
107,761	+				-1.5
107,762	-				-0.2
107,816	+				-0.0
107,816	+				+0.6
107,820	+				-0.9
107,820	+				+0.1
107,852	+				-1.3
107,961	+		Sama_0094	0.19	-0.3
107,962	-		Sama_0094	0.19	+0.6
107,962	-		Sama_0094	0.19	+1.8
108,063	+		Sama_0094	0.35	+0.4
108,063	+		Sama_0094	0.35	-1.1
108,063	+		Sama_0094	0.35	-0.2
108,063	+		Sama_0094	0.35	-0.0
108,063	+		Sama_0094	0.35	-1.6
108,064	-		Sama_0094	0.35	-0.9
108,064	-		Sama_0094	0.35	+1.0
108,064	-		Sama_0094	0.35	+0.2
108,064	-		Sama_0094	0.35	-0.8
108,064	-		Sama_0094	0.35	-1.0
108,064	-		Sama_0094	0.35	+2.2
108,080	+		Sama_0094	0.37	-0.6
108,080	+		Sama_0094	0.37	-2.6
108,080	+		Sama_0094	0.37	+0.1
108,080	+		Sama_0094	0.37	+0.2
108,081	-		Sama_0094	0.37	-0.6
108,081	-		Sama_0094	0.37	+0.8
108,081	-		Sama_0094	0.37	-1.4
108,108	+		Sama_0094	0.42	+0.8
108,198	+		Sama_0094	0.55	-0.5
108,199	-		Sama_0094	0.56	+1.5
108,231	-		Sama_0094	0.60	-0.8
108,237	+		Sama_0094	0.61	+0.0
108,237	+		Sama_0094	0.61	+1.4
108,237	+		Sama_0094	0.61	+0.2
108,238	-		Sama_0094	0.61	+1.1
108,238	-		Sama_0094	0.61	-1.3
108,238	-		Sama_0094	0.61	-0.4
108,238	-		Sama_0094	0.61	-1.8
108,243	+		Sama_0094	0.62	-1.5
108,243	+		Sama_0094	0.62	+2.0
108,244	-		Sama_0094	0.62	-0.8
108,244	-		Sama_0094	0.62	-0.0
108,244	-		Sama_0094	0.62	-0.4
108,244	-		Sama_0094	0.62	+2.4
108,271	+		Sama_0094	0.67	+2.9
108,271	+		Sama_0094	0.67	-2.0
108,272	-		Sama_0094	0.67	+1.4
108,272	-		Sama_0094	0.67	+0.8
108,276	+		Sama_0094	0.67	+1.4
108,291	+		Sama_0094	0.70	+0.5
108,291	+		Sama_0094	0.70	-1.3
108,291	+		Sama_0094	0.70	-1.6
108,291	+		Sama_0094	0.70	-1.5
108,291	+		Sama_0094	0.70	+0.4
108,292	-		Sama_0094	0.70	-1.0
108,292	-		Sama_0094	0.70	-0.4
108,292	-		Sama_0094	0.70	+0.2
108,292	-		Sama_0094	0.70	+0.2
108,294	+		Sama_0094	0.70	+0.0
108,294	+		Sama_0094	0.70	+0.8
108,294	+		Sama_0094	0.70	-1.2
108,294	+		Sama_0094	0.70	-1.2
108,294	+		Sama_0094	0.70	+0.1
108,294	+		Sama_0094	0.70	-0.8
108,294	+		Sama_0094	0.70	-0.1
108,295	-		Sama_0094	0.70	-2.3
108,295	-		Sama_0094	0.70	-1.3
108,295	-		Sama_0094	0.70	-0.2
108,330	+		Sama_0094	0.76	+0.2
108,330	+		Sama_0094	0.76	-1.3
108,331	-		Sama_0094	0.76	-0.1
108,331	-		Sama_0094	0.76	+1.2
108,363	-		Sama_0094	0.81	-1.3
108,388	-		Sama_0094	0.84	-1.3
108,395	+		Sama_0094	0.85	-0.6
108,395	+		Sama_0094	0.85	-0.5
108,395	+		Sama_0094	0.85	-1.3
108,396	-		Sama_0094	0.86	-2.6
108,396	-		Sama_0094	0.86	-0.5
108,412	+		Sama_0094	0.88	-1.8
108,412	+		Sama_0094	0.88	-0.6
108,412	+		Sama_0094	0.88	+0.3
108,412	+		Sama_0094	0.88	+0.3
108,412	+		Sama_0094	0.88	+0.2
108,412	+		Sama_0094	0.88	+1.4
108,412	+		Sama_0094	0.88	-1.6
108,412	+		Sama_0094	0.88	-1.6
108,412	+		Sama_0094	0.88	-1.3
108,412	+		Sama_0094	0.88	-1.8
108,412	+		Sama_0094	0.88	-0.5
108,412	+		Sama_0094	0.88	+0.9
108,412	+		Sama_0094	0.88	-0.3
108,412	+		Sama_0094	0.88	+0.6
108,412	+		Sama_0094	0.88	+0.4
108,412	+		Sama_0094	0.88	-1.8
108,413	-		Sama_0094	0.88	+0.5
108,413	-		Sama_0094	0.88	+0.9
108,413	-		Sama_0094	0.88	-0.5
108,413	-		Sama_0094	0.88	-1.8
108,413	-		Sama_0094	0.88	-0.3
108,413	-		Sama_0094	0.88	-0.5
108,413	-		Sama_0094	0.88	-0.5
108,413	-		Sama_0094	0.88	+2.4
108,413	-		Sama_0094	0.88	+0.5
108,413	-		Sama_0094	0.88	+1.2
108,413	-		Sama_0094	0.88	-0.8
108,413	-		Sama_0094	0.88	+1.6
108,413	-		Sama_0094	0.88	+1.9
108,413	-		Sama_0094	0.88	+1.0
108,413	-		Sama_0094	0.88	-1.3
108,413	-		Sama_0094	0.88	+0.7
108,413	-		Sama_0094	0.88	-1.3
108,413	-		Sama_0094	0.88	-0.9
108,414	+		Sama_0094	0.88	+0.6
108,414	+		Sama_0094	0.88	-1.2
108,414	+		Sama_0094	0.88	+0.7
108,414	+		Sama_0094	0.88	+0.5
108,414	+		Sama_0094	0.88	-0.2
108,414	+		Sama_0094	0.88	-0.5
108,414	+		Sama_0094	0.88	+0.1
108,414	+		Sama_0094	0.88	-2.5
108,414	+		Sama_0094	0.88	-1.3
108,414	+		Sama_0094	0.88	-1.0
108,414	+		Sama_0094	0.88	-0.7
108,414	+		Sama_0094	0.88	-0.8
108,414	+		Sama_0094	0.88	+1.0
108,414	+		Sama_0094	0.88	-0.5
108,414	+		Sama_0094	0.88	-1.8
108,414	+		Sama_0094	0.88	+0.8
108,414	+		Sama_0094	0.88	-0.5
108,414	+		Sama_0094	0.88	+0.9
108,414	+		Sama_0094	0.88	-0.6
108,414	+		Sama_0094	0.88	-1.2
108,414	+		Sama_0094	0.88	-1.8
108,414	+		Sama_0094	0.88	-0.1
108,414	+		Sama_0094	0.88	-0.5
108,414	+		Sama_0094	0.88	+0.4
108,414	+		Sama_0094	0.88	-2.8
108,414	+		Sama_0094	0.88	+0.3
108,414	+		Sama_0094	0.88	-1.6
108,414	+		Sama_0094	0.88	+0.2
108,414	+		Sama_0094	0.88	-0.6
108,414	+		Sama_0094	0.88	+0.2
108,414	+		Sama_0094	0.88	-0.5
108,414	+		Sama_0094	0.88	-1.0
108,414	+		Sama_0094	0.88	-0.7
108,414	+		Sama_0094	0.88	-1.8
108,414	+		Sama_0094	0.88	-0.5
108,415	-		Sama_0094	0.89	+0.4
108,415	-		Sama_0094	0.89	-2.1
108,415	-		Sama_0094	0.89	+0.3
108,415	-		Sama_0094	0.89	+1.8
108,415	-		Sama_0094	0.89	+0.1
108,415	-		Sama_0094	0.89	-0.9
108,415	-		Sama_0094	0.89	+3.4
108,415	-		Sama_0094	0.89	+0.8
108,415	-		Sama_0094	0.89	-0.5
108,415	-		Sama_0094	0.89	+1.4
108,415	-		Sama_0094	0.89	-1.5
108,415	-		Sama_0094	0.89	-0.2
108,415	-		Sama_0094	0.89	-2.1
108,415	-		Sama_0094	0.89	-1.0
108,415	-		Sama_0094	0.89	-2.1
108,415	-		Sama_0094	0.89	-3.0
108,415	-		Sama_0094	0.89	-2.5
108,415	-		Sama_0094	0.89	-1.0
108,415	-		Sama_0094	0.89	-1.8
108,415	-		Sama_0094	0.89	-2.2
108,415	-		Sama_0094	0.89	+1.1
108,415	-		Sama_0094	0.89	+1.9
108,415	-		Sama_0094	0.89	+0.4
108,415	-		Sama_0094	0.89	-1.3
108,415	-		Sama_0094	0.89	+0.1
108,415	-		Sama_0094	0.89	-0.2
108,415	-		Sama_0094	0.89	-0.6
108,415	-		Sama_0094	0.89	-0.2
108,415	-		Sama_0094	0.89	+1.8
108,415	-		Sama_0094	0.89	-2.1
108,415	-		Sama_0094	0.89	-0.6
108,415	-		Sama_0094	0.89	-2.0
108,473	+				-0.5
108,474	-				-1.2
108,525	-				-0.6
108,629	-		Sama_0095	0.13	+0.3
108,645	+		Sama_0095	0.15	-1.2
108,646	-		Sama_0095	0.15	-1.3
108,646	-		Sama_0095	0.15	-1.3
108,646	-		Sama_0095	0.15	-1.6
108,646	-		Sama_0095	0.15	-0.8
108,646	-		Sama_0095	0.15	+0.2
108,646	-		Sama_0095	0.15	-1.2
108,655	-		Sama_0095	0.16	-1.3
108,655	-		Sama_0095	0.16	+1.0
108,656	+		Sama_0095	0.16	-1.4
108,656	+		Sama_0095	0.16	+1.5
108,656	+		Sama_0095	0.16	-0.8
108,656	+		Sama_0095	0.16	+0.6
108,656	+		Sama_0095	0.16	-1.0
108,656	+		Sama_0095	0.16	+1.2
108,656	+		Sama_0095	0.16	-0.5
108,656	+		Sama_0095	0.16	-1.3
108,656	+		Sama_0095	0.16	+1.1
108,657	-		Sama_0095	0.16	-1.5
108,657	-		Sama_0095	0.16	-0.8
108,657	-		Sama_0095	0.16	-1.6
108,657	-		Sama_0095	0.16	+2.0
108,657	-		Sama_0095	0.16	+0.5
108,657	-		Sama_0095	0.16	+0.4
108,657	-		Sama_0095	0.16	+1.3
108,657	-		Sama_0095	0.16	+2.5
108,657	-		Sama_0095	0.16	+2.7
108,657	-		Sama_0095	0.16	+0.0
108,657	-		Sama_0095	0.16	-0.1
108,657	-		Sama_0095	0.16	-0.6
108,657	-		Sama_0095	0.16	-0.0
108,657	-		Sama_0095	0.16	+1.1
108,657	-		Sama_0095	0.16	-0.1
108,657	-		Sama_0095	0.16	-1.2
108,657	-		Sama_0095	0.16	+1.1
108,657	-		Sama_0095	0.16	-1.0
108,657	-		Sama_0095	0.16	+2.4
108,657	-		Sama_0095	0.16	-1.0
108,671	+		Sama_0095	0.18	-1.1
108,671	+		Sama_0095	0.18	-0.7
108,671	+		Sama_0095	0.18	+1.2
108,671	+		Sama_0095	0.18	+0.3
108,671	+		Sama_0095	0.18	+1.5
108,671	+		Sama_0095	0.18	+0.8
108,671	+		Sama_0095	0.18	+0.3
108,672	-		Sama_0095	0.18	-0.2
108,672	-		Sama_0095	0.18	-0.6
108,672	-		Sama_0095	0.18	-0.6
108,672	-		Sama_0095	0.18	-1.5
108,672	-		Sama_0095	0.18	+0.5
108,672	-		Sama_0095	0.18	+1.5
108,672	-		Sama_0095	0.18	+0.8
108,672	-		Sama_0095	0.18	+1.0
108,672	-		Sama_0095	0.18	+1.3
108,672	-		Sama_0095	0.18	-0.5
108,697	-		Sama_0095	0.21	-1.1
108,713	+		Sama_0095	0.23	+0.0
108,714	-		Sama_0095	0.23	+0.5
108,728	+		Sama_0095	0.25	+1.1
108,728	+		Sama_0095	0.25	+0.1
108,729	-		Sama_0095	0.25	-0.5
108,729	-		Sama_0095	0.25	-1.0
108,729	-		Sama_0095	0.25	-0.9
108,729	-		Sama_0095	0.25	+0.7
108,757	-		Sama_0095	0.28	+1.2
108,770	+		Sama_0095	0.30	+0.5
108,770	+		Sama_0095	0.30	+0.2
108,770	+		Sama_0095	0.30	+0.2
108,770	+		Sama_0095	0.30	-1.8
108,770	+		Sama_0095	0.30	-0.5
108,771	-		Sama_0095	0.30	-0.7
108,771	-		Sama_0095	0.30	-0.4
108,771	-		Sama_0095	0.30	-0.0
108,771	-		Sama_0095	0.30	+1.3
108,771	-		Sama_0095	0.30	+0.6
108,771	-		Sama_0095	0.30	-0.7
108,773	+		Sama_0095	0.30	-1.2
108,773	+		Sama_0095	0.30	+1.8
108,773	+		Sama_0095	0.30	-2.6
108,773	+		Sama_0095	0.30	-0.3
108,773	+		Sama_0095	0.30	+0.5
108,774	-		Sama_0095	0.30	+1.3
108,774	-		Sama_0095	0.30	-1.1
108,774	-		Sama_0095	0.30	-0.6
108,863	+		Sama_0095	0.41	-0.8
108,863	+		Sama_0095	0.41	-0.1
108,863	+		Sama_0095	0.41	-0.7
108,863	+		Sama_0095	0.41	+0.3
108,863	+		Sama_0095	0.41	-0.2
108,863	+		Sama_0095	0.41	-1.2
108,863	+		Sama_0095	0.41	+0.4
108,864	-		Sama_0095	0.41	+0.5
108,864	-		Sama_0095	0.41	+0.2
108,891	+		Sama_0095	0.44	+0.9
108,891	+		Sama_0095	0.44	+0.4
108,891	+		Sama_0095	0.44	-0.6
108,892	-		Sama_0095	0.44	-0.4
108,892	-		Sama_0095	0.44	+1.5
108,892	-		Sama_0095	0.44	+0.2
108,892	-		Sama_0095	0.44	+0.8
108,989	+		Sama_0095	0.56	+1.1
108,989	+		Sama_0095	0.56	+1.3
108,989	+		Sama_0095	0.56	-0.1
108,989	+		Sama_0095	0.56	-1.2
108,989	+		Sama_0095	0.56	-0.9
108,989	+		Sama_0095	0.56	+2.0
108,989	+		Sama_0095	0.56	-1.4
108,990	-		Sama_0095	0.56	+1.2
108,990	-		Sama_0095	0.56	+3.4
109,015	-		Sama_0095	0.59	-1.2
109,015	-		Sama_0095	0.59	+0.4
109,023	+		Sama_0095	0.60	-0.5
109,024	-		Sama_0095	0.60	+2.3
109,024	-		Sama_0095	0.60	-0.4
109,024	-		Sama_0095	0.60	+2.8
109,025	+		Sama_0095	0.60	+0.0
109,026	-		Sama_0095	0.61	-0.5
109,035	+		Sama_0095	0.62	+0.0
109,036	-		Sama_0095	0.62	-0.2
109,048	+		Sama_0095	0.63	-1.0
109,049	-		Sama_0095	0.63	-2.3
109,049	-		Sama_0095	0.63	-0.5
109,049	-		Sama_0095	0.63	+2.4
109,059	+		Sama_0095	0.65	-0.2
109,060	-		Sama_0095	0.65	-2.9
109,060	-		Sama_0095	0.65	+0.1
109,115	+		Sama_0095	0.71	-1.9
109,115	+		Sama_0095	0.71	-1.3
109,115	+		Sama_0095	0.71	+0.5
109,116	-		Sama_0095	0.71	-0.8
109,116	-		Sama_0095	0.71	-1.4
109,116	-		Sama_0095	0.71	+0.2
109,116	-		Sama_0095	0.71	-1.8
109,116	-		Sama_0095	0.71	+0.6
109,119	+		Sama_0095	0.72	+2.1
109,120	-		Sama_0095	0.72	-1.2
109,134	+		Sama_0095	0.74	+1.0
109,135	-		Sama_0095	0.74	+0.2
109,163	+		Sama_0095	0.77	-1.9
109,163	+		Sama_0095	0.77	+3.4
109,163	+		Sama_0095	0.77	-0.2
109,164	-		Sama_0095	0.77	-0.4
109,164	-		Sama_0095	0.77	-0.8
109,167	+		Sama_0095	0.77	+1.8
109,167	+		Sama_0095	0.77	-1.3
109,167	+		Sama_0095	0.77	-0.2
109,167	+		Sama_0095	0.77	-0.0
109,167	+		Sama_0095	0.77	-1.0
109,167	+		Sama_0095	0.77	-1.0
109,167	+		Sama_0095	0.77	-1.8
109,167	+		Sama_0095	0.77	+0.6
109,168	-		Sama_0095	0.78	+0.3
109,168	-		Sama_0095	0.78	+0.6
109,168	-		Sama_0095	0.78	+0.2
109,168	-		Sama_0095	0.78	+1.0
109,168	-		Sama_0095	0.78	-1.3
109,168	-		Sama_0095	0.78	-2.1
109,168	-		Sama_0095	0.78	-0.2
109,168	-		Sama_0095	0.78	-0.3
109,168	-		Sama_0095	0.78	+1.2
109,168	-		Sama_0095	0.78	+0.8
109,168	-		Sama_0095	0.78	+0.8
109,168	-		Sama_0095	0.78	+1.2
109,168	-		Sama_0095	0.78	+0.9
109,168	-		Sama_0095	0.78	+1.8
109,168	-		Sama_0095	0.78	-1.3
109,193	+		Sama_0095	0.81	+0.0
109,274	-				+1.4
109,282	+				+0.2
109,282	+				+1.3
109,282	+				-2.1
109,282	+				-2.4
109,282	+				-1.5
109,283	-				-0.6
109,283	-				+1.8
109,283	-				+0.5
109,283	-				-2.8
109,301	+				-1.9
109,301	+				+0.7
109,301	+				-1.4
109,301	+				+1.8
109,301	+				+1.0
109,367	+				-2.6
109,380	-				+1.6
109,380	-				-0.3
109,380	-				+0.7
109,380	-				-2.3
109,382	-				-1.2
109,382	-				-1.9
109,429	+		Sama_0096	0.24	-1.9
109,429	+		Sama_0096	0.24	-1.5
109,429	+		Sama_0096	0.24	+0.8
109,430	-		Sama_0096	0.25	-0.5
109,430	-		Sama_0096	0.25	-0.4
109,455	-		Sama_0096	0.33	-1.2
109,455	-		Sama_0096	0.33	+0.0
109,462	+		Sama_0096	0.35	-0.3
109,463	-		Sama_0096	0.35	+0.2
109,484	+		Sama_0096	0.42	+1.7
109,485	-		Sama_0096	0.42	+0.1
109,485	-		Sama_0096	0.42	+0.2