Strain Fitness in Shewanella amazonensis SB2B around Sama_0046

Experiment: L-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lactate
49,028	+		Sama_0045	0.14	-0.8
49,028	+		Sama_0045	0.14	+0.4
49,028	+		Sama_0045	0.14	-0.8
49,028	+		Sama_0045	0.14	+0.2
49,029	-		Sama_0045	0.14	-1.1
49,029	-		Sama_0045	0.14	-1.0
49,029	-		Sama_0045	0.14	-0.9
49,029	-		Sama_0045	0.14	-0.9
49,051	-		Sama_0045	0.17	+0.0
49,060	+		Sama_0045	0.18	-1.0
49,061	-		Sama_0045	0.18	+0.2
49,164	+		Sama_0045	0.28	-0.5
49,164	+		Sama_0045	0.28	-0.5
49,165	-		Sama_0045	0.28	-2.3
49,165	-		Sama_0045	0.28	-2.1
49,366	+		Sama_0045	0.48	-1.9
49,367	-		Sama_0045	0.48	+0.5
49,442	+		Sama_0045	0.55	-3.4
49,442	+		Sama_0045	0.55	-1.2
49,443	-		Sama_0045	0.55	-1.6
49,443	-		Sama_0045	0.55	-1.0
49,443	-		Sama_0045	0.55	-2.6
49,443	-		Sama_0045	0.55	-1.6
49,443	-		Sama_0045	0.55	+0.5
49,466	+		Sama_0045	0.57	-1.3
49,467	-		Sama_0045	0.58	-1.2
49,564	+		Sama_0045	0.67	+1.6
49,613	-		Sama_0045	0.72	-0.2
49,637	+		Sama_0045	0.74	+1.8
49,637	+		Sama_0045	0.74	+0.4
49,638	-		Sama_0045	0.74	+1.5
49,638	-		Sama_0045	0.74	-0.8
49,639	+		Sama_0045	0.74	-0.4
49,639	+		Sama_0045	0.74	-1.1
49,639	+		Sama_0045	0.74	+0.4
49,639	+		Sama_0045	0.74	-3.5
49,639	+		Sama_0045	0.74	-2.7
49,640	-		Sama_0045	0.75	+1.0
49,640	-		Sama_0045	0.75	+0.7
49,640	-		Sama_0045	0.75	+0.8
49,640	-		Sama_0045	0.75	-0.4
49,640	-		Sama_0045	0.75	-0.3
49,640	-		Sama_0045	0.75	-0.5
49,651	+		Sama_0045	0.76	-1.5
49,651	+		Sama_0045	0.76	-0.8
49,652	-		Sama_0045	0.76	+0.2
49,652	-		Sama_0045	0.76	-0.2
49,658	+		Sama_0045	0.76	-1.6
49,658	+		Sama_0045	0.76	+0.1
49,658	+		Sama_0045	0.76	-1.6
49,658	+		Sama_0045	0.76	-0.2
49,658	+		Sama_0045	0.76	+0.2
49,659	-		Sama_0045	0.76	-2.3
49,659	-		Sama_0045	0.76	+0.2
49,659	-		Sama_0045	0.76	-1.3
49,659	-		Sama_0045	0.76	-0.8
49,659	-		Sama_0045	0.76	-2.6
49,659	-		Sama_0045	0.76	+2.4
49,659	-		Sama_0045	0.76	+1.1
49,659	-		Sama_0045	0.76	+0.6
49,659	-		Sama_0045	0.76	-2.1
49,659	-		Sama_0045	0.76	+0.8
49,679	+		Sama_0045	0.78	-0.4
49,679	+		Sama_0045	0.78	+1.1
49,679	+		Sama_0045	0.78	+0.2
49,679	+		Sama_0045	0.78	-1.3
49,679	+		Sama_0045	0.78	-0.6
49,679	+		Sama_0045	0.78	-3.5
49,679	+		Sama_0045	0.78	-1.3
49,679	+		Sama_0045	0.78	-0.2
49,679	+		Sama_0045	0.78	-2.8
49,679	+		Sama_0045	0.78	+0.4
49,679	+		Sama_0045	0.78	-0.7
49,680	-		Sama_0045	0.78	+0.1
49,680	-		Sama_0045	0.78	-0.5
49,680	-		Sama_0045	0.78	-3.0
49,680	-		Sama_0045	0.78	-2.0
49,680	-		Sama_0045	0.78	+0.8
49,680	-		Sama_0045	0.78	-1.3
49,680	-		Sama_0045	0.78	-0.2
49,680	-		Sama_0045	0.78	+0.0
49,680	-		Sama_0045	0.78	-1.9
49,680	-		Sama_0045	0.78	-0.5
49,680	-		Sama_0045	0.78	+0.1
49,680	-		Sama_0045	0.78	+1.2
49,680	-		Sama_0045	0.78	+1.5
49,700	+		Sama_0045	0.80	+0.2
49,700	+		Sama_0045	0.80	+0.6
49,700	+		Sama_0045	0.80	-0.1
49,701	-		Sama_0045	0.81	-1.0
49,748	+		Sama_0045	0.85	-1.6
49,749	-		Sama_0045	0.85	+0.5
49,753	+		Sama_0045	0.86	-0.0
49,753	+		Sama_0045	0.86	+0.3
49,753	+		Sama_0045	0.86	+1.3
49,753	+		Sama_0045	0.86	-0.8
49,753	+		Sama_0045	0.86	-1.6
49,753	+		Sama_0045	0.86	+0.1
49,754	-		Sama_0045	0.86	-0.2
49,754	-		Sama_0045	0.86	+2.9
49,754	-		Sama_0045	0.86	+1.6
49,754	-		Sama_0045	0.86	+0.6
49,754	-		Sama_0045	0.86	-1.3
49,754	-		Sama_0045	0.86	-0.0
49,758	+		Sama_0045	0.86	-2.1
49,758	+		Sama_0045	0.86	-1.3
49,758	+		Sama_0045	0.86	-1.5
49,758	+		Sama_0045	0.86	+0.7
49,758	+		Sama_0045	0.86	-1.5
49,759	-		Sama_0045	0.86	-0.0
49,774	+		Sama_0045	0.88	-0.6
49,775	-		Sama_0045	0.88	+2.0
49,775	-		Sama_0045	0.88	-1.0
49,775	-		Sama_0045	0.88	+0.9
49,793	+		Sama_0045	0.90	+0.1
49,793	+		Sama_0045	0.90	-0.8
49,793	+		Sama_0045	0.90	+0.3
49,793	+		Sama_0045	0.90	-1.2
49,793	+		Sama_0045	0.90	-1.0
49,800	-				+0.2
49,828	+				+1.0
49,828	+				+0.6
49,828	+				+0.1
49,829	-				+1.1
49,864	+				+0.0
49,875	+				+0.7
49,875	+				-0.5
49,896	+				-0.1
49,896	+				+0.8
49,896	+				-0.5
49,897	-				-0.3
49,897	-				-0.8
49,897	-				+1.5
49,897	-				+2.5
49,919	+				-1.0
49,919	+				+1.8
49,919	+				+2.8
49,919	+				+0.1
49,919	+				+1.0
49,919	+				+1.4
49,919	+				+0.2
49,919	+				+2.3
49,919	+				+2.1
49,919	+				+1.0
49,919	+				+2.3
49,919	+				+0.9
49,920	-				+0.7
49,920	-				+1.0
49,920	-				-0.2
49,920	-				+2.2
49,920	-				+2.1
49,923	+				-1.9
49,923	+				-0.0
49,923	+				+1.4
49,923	+				+1.9
49,934	+				+1.7
49,934	+				+1.8
49,934	+				+1.5
49,934	+				+1.2
49,934	+				-0.2
49,934	+				+0.7
49,934	+				+2.2
49,934	+				+0.0
49,934	+				+2.8
49,934	+				+2.0
49,934	+				+3.1
49,934	+				+1.7
49,934	+				+0.2
49,935	-				-1.0
49,935	-				+0.7
49,935	-				+1.2
49,935	-				+4.7
49,935	-				+0.9
49,935	-				+0.5
49,935	-				+0.8
49,935	-				-0.5
49,935	-				+2.8
50,029	+		Sama_0046	0.27	+0.4
50,029	+		Sama_0046	0.27	+1.7
50,030	-		Sama_0046	0.27	+2.6
50,030	-		Sama_0046	0.27	-0.9
50,084	+		Sama_0046	0.38	+1.5
50,084	+		Sama_0046	0.38	+1.5
50,084	+		Sama_0046	0.38	-0.6
50,084	+		Sama_0046	0.38	+0.3
50,084	+		Sama_0046	0.38	-1.2
50,085	-		Sama_0046	0.38	-0.8
50,085	-		Sama_0046	0.38	+0.0
50,120	+		Sama_0046	0.46	+0.4
50,120	+		Sama_0046	0.46	+2.7
50,120	+		Sama_0046	0.46	+1.2
50,120	+		Sama_0046	0.46	+0.2
50,120	+		Sama_0046	0.46	-1.9
50,120	+		Sama_0046	0.46	-0.9
50,120	+		Sama_0046	0.46	+1.1
50,120	+		Sama_0046	0.46	+1.7
50,120	+		Sama_0046	0.46	+1.8
50,120	+		Sama_0046	0.46	+2.1
50,120	+		Sama_0046	0.46	+2.4
50,120	+		Sama_0046	0.46	+1.6
50,120	+		Sama_0046	0.46	+1.4
50,120	+		Sama_0046	0.46	+2.3
50,120	+		Sama_0046	0.46	+0.2
50,121	-		Sama_0046	0.46	-2.0
50,121	-		Sama_0046	0.46	+1.5
50,121	-		Sama_0046	0.46	+1.0
50,121	-		Sama_0046	0.46	+1.8
50,121	-		Sama_0046	0.46	+0.4
50,121	-		Sama_0046	0.46	+1.1
50,122	+		Sama_0046	0.46	+1.4
50,122	+		Sama_0046	0.46	+1.7
50,123	-		Sama_0046	0.46	+1.3
50,123	-		Sama_0046	0.46	+3.0
50,123	-		Sama_0046	0.46	+0.2
50,123	-		Sama_0046	0.46	+1.4
50,123	-		Sama_0046	0.46	+1.7
50,123	-		Sama_0046	0.46	-0.6
50,123	-		Sama_0046	0.46	+0.5
50,123	-		Sama_0046	0.46	+1.7
50,123	-		Sama_0046	0.46	+1.7
50,123	-		Sama_0046	0.46	+1.2
50,123	-		Sama_0046	0.46	+0.8
50,170	+		Sama_0046	0.56	+1.2
50,170	+		Sama_0046	0.56	+0.4
50,171	-		Sama_0046	0.56	+1.3
50,171	-		Sama_0046	0.56	+1.1
50,171	-		Sama_0046	0.56	+0.3
50,171	-		Sama_0046	0.56	+1.4
50,171	-		Sama_0046	0.56	+2.4
50,171	-		Sama_0046	0.56	+4.4
50,187	+		Sama_0046	0.60	+1.7
50,187	+		Sama_0046	0.60	+1.2
50,187	+		Sama_0046	0.60	+1.6
50,187	+		Sama_0046	0.60	-0.8
50,188	-		Sama_0046	0.60	+2.8
50,188	-		Sama_0046	0.60	+1.4
50,324	+		Sama_0046	0.88	+0.2
50,325	-		Sama_0046	0.88	+3.0
50,341	+				+0.1
50,398	+				+0.2
50,399	-				+2.1
50,437	+				-3.0
50,437	+				-1.2
50,437	+				-1.9
50,437	+				+0.8
50,437	+				-0.2
50,437	+				-0.5
50,438	-				+0.2
50,438	-				-0.1
50,438	-				-1.3
50,438	-				-1.0
50,438	-				+1.0
50,438	-				+0.8
50,454	+				-0.5
50,455	-				-0.9
50,455	-				+0.2
50,493	+		Sama_0047	0.12	+0.3
50,493	+		Sama_0047	0.12	-0.2
50,493	+		Sama_0047	0.12	+0.7
50,493	+		Sama_0047	0.12	-0.1
50,494	-		Sama_0047	0.12	+0.7
50,494	-		Sama_0047	0.12	-2.1
50,495	+		Sama_0047	0.12	+0.6
50,496	-		Sama_0047	0.13	+1.3
50,496	-		Sama_0047	0.13	+1.7
50,496	-		Sama_0047	0.13	-1.5
50,496	-		Sama_0047	0.13	-0.2
50,537	+		Sama_0047	0.28	+1.2
50,537	+		Sama_0047	0.28	-0.1
50,537	+		Sama_0047	0.28	-0.2
50,537	+		Sama_0047	0.28	-1.1
50,537	+		Sama_0047	0.28	-0.3
50,537	+		Sama_0047	0.28	-1.7
50,537	+		Sama_0047	0.28	-1.9
50,537	+		Sama_0047	0.28	-1.5
50,537	+		Sama_0047	0.28	+3.8
50,537	+		Sama_0047	0.28	-0.8
50,538	-		Sama_0047	0.28	+1.4
50,538	-		Sama_0047	0.28	-0.2
50,538	-		Sama_0047	0.28	+0.4
50,538	-		Sama_0047	0.28	+0.8
50,538	-		Sama_0047	0.28	-0.5
50,541	+		Sama_0047	0.30	-1.2
50,541	+		Sama_0047	0.30	-1.0
50,541	+		Sama_0047	0.30	-1.0
50,541	+		Sama_0047	0.30	-2.9
50,550	+		Sama_0047	0.33	-2.2
50,550	+		Sama_0047	0.33	-0.8
50,551	-		Sama_0047	0.33	+0.1
50,557	-		Sama_0047	0.36	-0.5
50,685	+		Sama_0047	0.84	-0.0
50,685	+		Sama_0047	0.84	-1.1
50,686	-		Sama_0047	0.84	+1.8
50,686	-		Sama_0047	0.84	+0.4
50,686	-		Sama_0047	0.84	-0.8
50,686	-		Sama_0047	0.84	+0.4
50,686	-		Sama_0047	0.84	-0.2
50,686	-		Sama_0047	0.84	-0.5
50,686	-		Sama_0047	0.84	-0.5
50,697	+		Sama_0047	0.88	+0.2
50,698	-		Sama_0047	0.88	+0.2
50,708	+				+0.2
50,708	+				+1.0
50,711	+				+0.1
50,711	+				-1.6
50,711	+				-2.5
50,746	-				-2.3
50,746	-				+0.8
50,748	+				+0.4
50,749	-				+0.2
50,773	+				-1.8
50,773	+				+0.2
50,812	+				-3.0
50,812	+				-1.9
50,812	+				+2.4
50,812	+				-0.5
50,812	+				-2.4
50,812	+				-0.0
50,813	-				+1.7
50,813	-				-1.5
50,813	-				+0.2
50,818	+				+0.7
50,819	-				+0.2
50,830	+				+1.5
50,830	+				+1.4
50,830	+				-0.5
50,830	+				+2.1
50,830	+				+1.3
50,830	+				-0.4
50,830	+				+0.6
50,831	-				-0.7
50,831	-				-2.2
50,831	-				+0.2
50,899	+				-1.0
50,899	+				-0.5
50,899	+				-1.1
50,899	+				-0.9
50,900	-				-0.0
50,900	-				+1.5
50,900	-				-1.3
50,905	+				+3.4
50,906	-				-1.0
50,906	-				-0.8
50,906	-				-1.3
50,973	+				-1.3
50,973	+				-0.8
50,974	-				-0.5
50,974	-				+1.2
50,974	-				+0.4
50,974	-				+1.2
50,974	-				-1.0
51,009	-				+0.2
51,027	+				+1.4
51,027	+				-0.2
51,027	+				+0.1
51,028	-				+0.4
51,028	-				+1.0
51,028	-				-1.8
51,028	-				+0.4
51,028	-				+1.2
51,047	+				-1.3
51,047	+				-0.7
51,047	+				+1.5
51,047	+				+0.0
51,047	+				-2.1
51,048	-				-0.5
51,048	-				+1.6
51,054	-				-0.6
51,063	-				+1.0
51,066	+				+0.5
51,067	+				-0.8
51,067	+				-0.6
51,067	+				+0.0
51,067	+				-0.0
51,067	+				+1.6
51,067	+				+0.4
51,067	+				-1.2
51,067	+				-2.8
51,067	+				-1.2
51,067	+				+1.7
51,067	+				+0.2
51,067	+				+0.6
51,067	+				-0.7
51,067	+				-0.1
51,067	+				+0.4
51,067	+				-1.1
51,068	-				-0.9
51,068	-				-0.1
51,068	-				-0.5
51,068	-				+1.0
51,068	-				+0.5
51,068	-				+1.4
51,068	-				+1.3
51,068	-				+0.9
51,068	-				+0.0
51,068	-				+2.3
51,068	-				+2.8
51,068	-				+1.7
51,068	-				-1.5
51,068	-				-0.2
51,068	-				+1.3
51,068	-				+0.8
51,068	-				-0.3
51,068	-				+0.4
51,068	-				-0.8
51,068	-				+0.8
51,069	+				-0.6
51,069	+				-0.0
51,069	+				-1.8
51,069	+				-1.0
51,069	+				-2.4
51,069	+				-2.9
51,069	+				+0.5
51,069	+				-1.2
51,069	+				-0.1
51,069	+				+1.1
51,069	+				+0.2
51,069	+				-0.0
51,069	+				+0.1
51,070	-				-0.0
51,070	-				-0.5
51,070	-				-0.8
51,070	-				+0.5
51,070	-				-1.6
51,070	-				+2.5
51,070	-				+1.0
51,111	+				-1.4
51,111	+				+0.9
51,112	-				+1.2
51,112	-				-1.1
51,127	+				-2.3
51,127	+				-2.3
51,127	+				-2.9
51,128	-				+0.4
51,128	-				-1.8
51,128	-				-1.4
51,128	-				+0.6
51,138	+				-0.4
51,139	-				-2.2
51,139	-				-0.7
51,149	+				+0.2
51,149	+				-1.5
51,149	+				-1.3
51,149	+				-1.1
51,149	+				-1.6
51,150	-				-1.0
51,150	-				-1.2
51,150	-				+1.4
51,166	+				-0.2
51,166	+				+0.0
51,166	+				-0.0
51,167	-				-1.8
51,167	-				-0.3
51,167	-				-0.6
51,167	-				+0.2
51,171	+				-1.6
51,172	-				+1.0
51,172	-				+0.8
51,172	-				-0.9
51,188	+				-0.1
51,189	-				-0.3
51,189	-				-0.0
51,218	+				+0.8
51,218	+				+0.0
51,219	-				+0.2
51,248	+				+0.1
51,249	-				+0.7
51,249	-				-1.6
51,249	-				-0.2
51,249	-				-0.8
51,249	-				-1.2
51,258	+				+0.8
51,258	+				+0.8
51,259	-				-0.2
51,263	+				-0.2
51,263	+				-0.7
51,279	-				-0.2
51,280	-				+1.6
51,280	-				+0.8
51,280	-				-1.2
51,300	+				-0.2
51,300	+				-0.4
51,300	+				-1.0
51,300	+				-1.3
51,301	-				+1.2
51,301	-				-0.5