Strain Fitness in Shewanella loihica PV-4 around Shew_3498

Experiment: Cephalothin 0.1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_3496 and Shew_3497 are separated by 239 nucleotidesShew_3497 and rpoZ are separated by 59 nucleotidesrpoZ and Shew_3499 are separated by 13 nucleotides Shew_3496: Shew_3496 - hypothetical protein (RefSeq), at 4,182,237 to 4,183,430 _3496 Shew_3497: Shew_3497 - guanylate kinase (RefSeq), at 4,183,670 to 4,184,293 _3497 Shew_3498: rpoZ - DNA-directed RNA polymerase subunit omega (RefSeq), at 4,184,353 to 4,184,634 rpoZ Shew_3499: Shew_3499 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq), at 4,184,648 to 4,186,753 _3499 Position (kb) 4184 4185Strain fitness (log2 ratio) -2 -1 0 1 2at 4183.442 kb on + strandat 4183.519 kb on + strandat 4183.611 kb on + strandat 4184.446 kb on + strand, within rpoZat 4184.556 kb on + strand, within rpoZ

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml
remove
4,183,442 + +1.1
4,183,519 + -2.2
4,183,611 + +1.2
4,184,446 + rpoZ Shew_3498 0.33 +2.4
4,184,556 + rpoZ Shew_3498 0.72 +2.3

Or see this region's nucleotide sequence