Strain Fitness in Shewanella loihica PV-4 around Shew_3245

Experiment: Cephalothin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 0.1 mg/ml
3,880,940	-				+0.1
3,881,119	+				+0.0
3,881,253	+		Shew_3244	0.11	-0.0
3,881,514	+		Shew_3244	0.47	-0.9
3,881,514	+		Shew_3244	0.47	-1.2
3,881,667	-		Shew_3244	0.68	-1.0
3,881,736	-		Shew_3244	0.78	-3.3
3,881,827	+				-0.9
3,881,959	+				+0.2
3,882,017	+		Shew_3245	0.13	-0.1
3,882,054	+		Shew_3245	0.17	-0.1
3,882,334	-		Shew_3245	0.48	+0.3
3,882,545	-		Shew_3245	0.72	-0.1
3,882,563	-		Shew_3245	0.74	-0.6
3,882,705	+		Shew_3245	0.90	+0.9
3,882,713	-				+0.1
3,882,713	-				+1.1
3,882,749	+				+0.8
3,882,749	+				+0.1
3,882,757	+				-1.9
3,882,757	-				-0.0
3,882,757	-				-0.5
3,882,757	-				-0.5
3,882,764	+				+0.1
3,882,765	-				-0.4
3,882,767	+				+1.0
3,882,767	+				+1.7
3,882,767	+				+0.7
3,882,772	-				-1.0
3,882,775	-				-0.9
3,882,775	-				+0.4
3,882,775	-				+0.9
3,882,775	-				-0.1
3,882,775	-				+0.7
3,882,777	-				+0.2
3,882,779	+				+0.4
3,882,779	+				+1.1
3,882,785	-				+0.3
3,882,824	-				+1.1
3,882,831	-				+0.2
3,882,834	-				-0.1
3,882,878	+				+0.4
3,882,878	+				-0.3
3,882,878	+				+0.4
3,882,878	+				-1.8
3,882,878	+				-0.1
3,882,878	+				+0.6
3,882,878	+				-0.0
3,882,878	+				+3.1
3,882,886	-				+0.1
3,882,886	-				-0.2
3,882,886	-				+0.1
3,882,886	-				+0.3
3,882,886	-				-1.8
3,882,886	-				+1.1
3,882,886	-				-1.2
3,882,886	-				-0.2
3,882,886	-				+1.0
3,882,886	-				+0.4
3,882,888	+				-0.8
3,882,935	+				+0.5
3,882,958	+				+1.7
3,882,981	-				-0.3
3,882,987	-				+1.0
3,882,989	-				-0.2
3,883,001	+				+3.1
3,883,061	+				-1.4
3,883,061	+				+1.7
3,883,061	+				+2.7
3,883,061	+				-0.2
3,883,061	+				+1.1
3,883,278	-				-0.3
3,883,319	+				+0.4
3,883,362	+				+0.6
3,883,362	+				-2.2
3,883,362	+				+0.3
3,883,362	+				+0.5
3,883,362	+				+0.1
3,883,362	+				-0.3
3,883,363	+				-0.0
3,883,370	-				-0.5
3,883,370	-				+0.5
3,883,370	-				-0.9
3,883,370	-				+0.2
3,883,388	+				-0.8
3,883,388	+				+1.0
3,883,388	+				-0.2
3,883,388	+				+0.6
3,883,388	+				+0.5
3,883,388	+				-1.8
3,883,388	+				+0.5
3,883,388	+				+0.7
3,883,388	+				+0.7
3,883,388	+				-0.3
3,883,393	+				+0.6
3,883,395	+				-0.8
3,883,396	-				+0.5
3,883,396	-				+1.5
3,883,396	-				-0.5
3,883,396	-				-0.4
3,883,396	-				-1.9
3,883,396	-				+1.1
3,883,396	-				-1.2
3,883,396	-				+1.1
3,883,396	-				-2.4
3,883,396	-				+0.5
3,883,403	-				+1.1
3,883,407	+				+0.2
3,883,415	-				+1.3
3,883,456	-		Shew_3246	0.15	+0.5
3,883,481	-		Shew_3246	0.19	-0.4