Strain Fitness in Shewanella loihica PV-4 around Shew_3003

Experiment: Cephalothin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 0.1 mg/ml
3,564,231	+		Shew_3002	0.35	-0.1
3,564,368	+		Shew_3002	0.52	+1.1
3,564,453	-		Shew_3002	0.63	-0.1
3,564,986	-				-0.0
3,565,029	+				-0.8
3,565,037	-				-0.7
3,565,231	+	fadE	Shew_3003	0.13	+0.2
3,565,241	+	fadE	Shew_3003	0.13	+0.1
3,565,280	-	fadE	Shew_3003	0.15	+1.6
3,565,461	+	fadE	Shew_3003	0.23	-1.2
3,565,568	+	fadE	Shew_3003	0.28	-0.9
3,565,689	-	fadE	Shew_3003	0.33	-0.6
3,565,753	+	fadE	Shew_3003	0.36	-0.9
3,565,753	+	fadE	Shew_3003	0.36	-0.7
3,565,864	+	fadE	Shew_3003	0.41	+1.6
3,566,011	-	fadE	Shew_3003	0.47	-0.3
3,566,131	-	fadE	Shew_3003	0.53	+0.0
3,566,295	+	fadE	Shew_3003	0.60	-0.5
3,566,463	-	fadE	Shew_3003	0.68	-0.4
3,566,553	-	fadE	Shew_3003	0.72	-0.4
3,566,564	-	fadE	Shew_3003	0.72	+0.0
3,566,662	+	fadE	Shew_3003	0.77	-0.3
3,566,672	+	fadE	Shew_3003	0.77	-0.2
3,566,770	+	fadE	Shew_3003	0.81	-0.3
3,566,954	+	fadE	Shew_3003	0.90	-0.5
3,567,056	-				-1.3
3,567,744	+		Shew_3004	0.15	-0.3
3,567,815	-		Shew_3004	0.24	+0.3
3,568,100	+		Shew_3004	0.63	+0.1