Strain Fitness in Shewanella loihica PV-4 around Shew_2881

Experiment: Cephalothin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2880 and Shew_2881 overlap by 1 nucleotidesShew_2881 and Shew_2882 are separated by 578 nucleotides Shew_2880: Shew_2880 - Na(+)-translocating NADH-quinone reductase subunit B (RefSeq), at 3,419,157 to 3,420,356 _2880 Shew_2881: Shew_2881 - Na(+)-translocating NADH-quinone reductase subunit A (RefSeq), at 3,420,356 to 3,421,690 _2881 Shew_2882: Shew_2882 - S-ribosylhomocysteinase (RefSeq), at 3,422,269 to 3,422,778 _2882 Position (kb) 3420 3421 3422Strain fitness (log2 ratio) -1 0 1at 3419.835 kb on - strand, within Shew_2880at 3422.367 kb on + strand, within Shew_2882at 3422.367 kb on + strand, within Shew_2882at 3422.375 kb on - strand, within Shew_2882at 3422.456 kb on - strand, within Shew_2882at 3422.578 kb on - strand, within Shew_2882

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml
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3,419,835 - Shew_2880 0.56 -0.8
3,422,367 + Shew_2882 0.19 -0.2
3,422,367 + Shew_2882 0.19 +0.5
3,422,375 - Shew_2882 0.21 +0.4
3,422,456 - Shew_2882 0.37 -0.3
3,422,578 - Shew_2882 0.61 +1.1

Or see this region's nucleotide sequence