Strain Fitness in Shewanella loihica PV-4 around Shew_2855

Experiment: Cephalothin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 0.1 mg/ml
3,384,416	-				+0.3
3,384,452	+		Shew_2853	0.17	+0.0
3,384,452	+		Shew_2853	0.17	-0.5
3,384,452	+		Shew_2853	0.17	+0.4
3,384,494	+		Shew_2853	0.29	-0.5
3,384,499	-		Shew_2853	0.31	-0.1
3,384,503	+		Shew_2853	0.32	-0.2
3,384,508	+		Shew_2853	0.33	+0.9
3,384,508	+		Shew_2853	0.33	-0.9
3,384,516	+		Shew_2853	0.35	+0.3
3,384,518	+		Shew_2853	0.36	-0.3
3,384,518	+		Shew_2853	0.36	+0.4
3,384,518	+		Shew_2853	0.36	-1.4
3,384,518	+		Shew_2853	0.36	+0.5
3,384,518	+		Shew_2853	0.36	+0.1
3,384,518	+		Shew_2853	0.36	+0.7
3,384,518	+		Shew_2853	0.36	-0.2
3,384,518	+		Shew_2853	0.36	-0.1
3,384,524	-		Shew_2853	0.38	+0.2
3,384,524	-		Shew_2853	0.38	+0.6
3,384,526	-		Shew_2853	0.38	-0.6
3,384,526	-		Shew_2853	0.38	-0.6
3,384,526	+		Shew_2853	0.38	-2.0
3,384,526	-		Shew_2853	0.38	-1.3
3,384,526	-		Shew_2853	0.38	-0.6
3,384,526	-		Shew_2853	0.38	+0.6
3,384,526	-		Shew_2853	0.38	+0.6
3,384,526	-		Shew_2853	0.38	-0.2
3,384,526	-		Shew_2853	0.38	-0.1
3,384,526	-		Shew_2853	0.38	+0.6
3,384,526	-		Shew_2853	0.38	-0.0
3,384,526	-		Shew_2853	0.38	+0.0
3,384,526	-		Shew_2853	0.38	-1.0
3,384,526	-		Shew_2853	0.38	+0.2
3,384,526	-		Shew_2853	0.38	+0.5
3,384,526	-		Shew_2853	0.38	+0.3
3,384,526	-		Shew_2853	0.38	-1.9
3,384,526	-		Shew_2853	0.38	-0.5
3,384,526	-		Shew_2853	0.38	+0.8
3,384,526	-		Shew_2853	0.38	+0.5
3,384,527	-		Shew_2853	0.38	+0.8
3,384,527	-		Shew_2853	0.38	+0.4
3,384,531	-		Shew_2853	0.39	+0.8
3,384,539	+		Shew_2853	0.42	+0.0
3,384,544	+		Shew_2853	0.43	+0.2
3,384,575	+		Shew_2853	0.52	-0.4
3,384,599	-		Shew_2853	0.58	+1.1
3,384,599	-		Shew_2853	0.58	+0.1
3,384,609	-		Shew_2853	0.61	+0.7
3,384,613	+		Shew_2853	0.62	-0.3
3,384,613	+		Shew_2853	0.62	+1.8
3,384,613	+		Shew_2853	0.62	+0.8
3,384,613	+		Shew_2853	0.62	-0.4
3,384,613	+		Shew_2853	0.62	-0.3
3,384,613	+		Shew_2853	0.62	+0.7
3,384,613	+		Shew_2853	0.62	-0.0
3,384,613	+		Shew_2853	0.62	+0.9
3,384,613	+		Shew_2853	0.62	+0.3
3,384,613	+		Shew_2853	0.62	-1.1
3,384,616	-		Shew_2853	0.63	-0.3
3,384,621	-		Shew_2853	0.64	-0.5
3,384,621	-		Shew_2853	0.64	-0.3
3,384,621	-		Shew_2853	0.64	+0.1
3,384,621	-		Shew_2853	0.64	+0.2
3,384,621	-		Shew_2853	0.64	-0.1
3,384,621	-		Shew_2853	0.64	+0.5
3,384,621	-		Shew_2853	0.64	-1.1
3,384,623	+		Shew_2853	0.65	-0.7
3,384,623	+		Shew_2853	0.65	+0.2
3,384,647	+		Shew_2853	0.72	+0.0
3,384,668	+		Shew_2853	0.78	+0.5
3,384,668	+		Shew_2853	0.78	+1.0
3,384,668	+		Shew_2853	0.78	-0.2
3,384,668	+		Shew_2853	0.78	+0.0
3,384,668	+		Shew_2853	0.78	+0.6
3,384,668	+		Shew_2853	0.78	-1.1
3,384,668	+		Shew_2853	0.78	-0.4
3,384,668	+		Shew_2853	0.78	-0.1
3,384,668	+		Shew_2853	0.78	+0.3
3,384,676	-		Shew_2853	0.80	+0.8
3,384,676	-		Shew_2853	0.80	+0.7
3,384,676	-		Shew_2853	0.80	+0.7
3,384,682	+		Shew_2853	0.81	-0.6
3,384,682	+		Shew_2853	0.81	+0.5
3,384,682	+		Shew_2853	0.81	+0.2
3,384,682	+		Shew_2853	0.81	-0.9
3,384,682	+		Shew_2853	0.81	+0.8
3,384,682	+		Shew_2853	0.81	+0.4
3,384,682	+		Shew_2853	0.81	-1.9
3,384,682	+		Shew_2853	0.81	+0.5
3,384,682	+		Shew_2853	0.81	+0.1
3,384,682	+		Shew_2853	0.81	-1.2
3,384,682	+		Shew_2853	0.81	-0.4
3,384,682	+		Shew_2853	0.81	+0.6
3,384,682	+		Shew_2853	0.81	-0.8
3,384,682	+		Shew_2853	0.81	-0.4
3,384,682	+		Shew_2853	0.81	-0.3
3,384,682	+		Shew_2853	0.81	-0.3
3,384,682	+		Shew_2853	0.81	+0.9
3,384,682	+		Shew_2853	0.81	+0.0
3,384,682	+		Shew_2853	0.81	-0.5
3,384,683	+		Shew_2853	0.82	+1.1
3,384,683	+		Shew_2853	0.82	-0.1
3,384,690	-		Shew_2853	0.84	+1.5
3,384,690	-		Shew_2853	0.84	-0.3
3,384,690	-		Shew_2853	0.84	+0.3
3,384,690	-		Shew_2853	0.84	-1.1
3,384,690	-		Shew_2853	0.84	+1.6
3,384,690	-		Shew_2853	0.84	+0.7
3,384,690	-		Shew_2853	0.84	+1.9
3,384,690	-		Shew_2853	0.84	-0.4
3,384,690	-		Shew_2853	0.84	+0.8
3,384,690	-		Shew_2853	0.84	-0.0
3,384,690	-		Shew_2853	0.84	+0.1
3,384,690	-		Shew_2853	0.84	+0.1
3,384,690	-		Shew_2853	0.84	+1.1
3,384,690	-		Shew_2853	0.84	+0.1
3,384,690	-		Shew_2853	0.84	+0.0
3,384,690	-		Shew_2853	0.84	+0.0
3,384,690	-		Shew_2853	0.84	-0.1
3,384,690	-		Shew_2853	0.84	+0.8
3,384,690	-		Shew_2853	0.84	+0.8
3,384,690	-		Shew_2853	0.84	-1.1
3,384,690	-		Shew_2853	0.84	-0.8
3,384,701	-		Shew_2853	0.87	+0.3
3,384,701	-		Shew_2853	0.87	-1.2
3,384,702	+		Shew_2853	0.87	+0.7
3,384,702	+		Shew_2853	0.87	+0.0
3,384,703	+		Shew_2853	0.87	+0.2
3,384,703	+		Shew_2853	0.87	-0.4
3,384,703	+		Shew_2853	0.87	+2.0
3,384,703	+		Shew_2853	0.87	-1.2
3,384,703	+		Shew_2853	0.87	+0.3
3,384,703	+		Shew_2853	0.87	+0.3
3,384,703	+		Shew_2853	0.87	-0.2
3,384,703	+		Shew_2853	0.87	+0.7
3,384,703	+		Shew_2853	0.87	+0.2
3,384,703	+		Shew_2853	0.87	-0.5
3,384,703	+		Shew_2853	0.87	-0.1
3,384,703	+		Shew_2853	0.87	-0.9
3,384,703	+		Shew_2853	0.87	-0.4
3,384,711	-		Shew_2853	0.89	-0.1
3,384,711	-		Shew_2853	0.89	+1.5
3,384,711	-		Shew_2853	0.89	-1.1
3,384,711	-		Shew_2853	0.89	+0.2
3,384,711	-		Shew_2853	0.89	+0.1
3,384,711	-		Shew_2853	0.89	-0.4
3,384,711	-		Shew_2853	0.89	+0.5
3,384,712	+		Shew_2853	0.90	+0.4
3,384,712	+		Shew_2853	0.90	+2.0
3,384,712	+		Shew_2853	0.90	+0.9
3,384,712	+		Shew_2853	0.90	+0.3
3,384,712	+		Shew_2853	0.90	+0.1
3,384,712	+		Shew_2853	0.90	-0.3
3,384,720	-				-0.0
3,384,720	-				-0.9
3,384,720	-				+0.3
3,384,720	-				+0.3
3,384,720	-				-0.7
3,384,720	-				+0.3
3,384,720	-				+0.4
3,384,720	-				-0.9
3,384,720	-				+0.1
3,384,720	-				-0.4
3,384,720	-				-0.0
3,384,720	-				+0.7
3,384,721	+				-2.2
3,384,722	+				+0.4
3,384,731	-				+0.4
3,384,731	-				-0.1
3,384,751	+				+0.3
3,384,751	+				-1.3
3,384,756	+				+0.4
3,384,756	+				+1.1
3,384,759	-				+0.6
3,384,762	+				+0.1
3,384,764	-				-0.4
3,384,772	+				+0.6
3,384,774	+				+1.0
3,384,774	+				-0.2
3,384,774	+				-0.7
3,384,774	+				+0.9
3,384,774	+				-0.4
3,384,780	-				+0.5
3,384,780	-				+0.4
3,384,780	-				-0.8
3,384,780	-				+0.1
3,384,782	+				+0.5
3,384,782	-				+0.7
3,384,782	+				+0.2
3,384,782	-				-3.0
3,384,782	-				+0.8
3,384,782	-				-0.5
3,384,782	-				+0.1
3,384,790	-				-0.3
3,384,800	-				+0.1
3,384,834	+		Shew_2854	0.12	-0.2
3,384,835	+		Shew_2854	0.12	-1.4
3,384,835	+		Shew_2854	0.12	+0.8
3,384,835	+		Shew_2854	0.12	+0.4
3,384,842	-		Shew_2854	0.13	+0.0
3,384,843	-		Shew_2854	0.14	+1.5
3,384,843	-		Shew_2854	0.14	+0.0
3,384,843	-		Shew_2854	0.14	+0.5
3,384,860	+		Shew_2854	0.17	-0.3
3,384,881	+		Shew_2854	0.21	+0.1
3,384,888	+		Shew_2854	0.23	-0.0
3,384,888	+		Shew_2854	0.23	+0.6
3,384,896	+		Shew_2854	0.24	+1.0
3,384,898	+		Shew_2854	0.25	-0.1
3,384,898	+		Shew_2854	0.25	+0.4
3,384,899	-		Shew_2854	0.25	-0.2
3,384,901	-		Shew_2854	0.25	+1.0
3,384,906	-		Shew_2854	0.26	-0.2
3,384,929	+		Shew_2854	0.31	-1.2
3,384,994	+		Shew_2854	0.44	+0.1
3,384,994	+		Shew_2854	0.44	+1.5
3,385,011	-		Shew_2854	0.47	+1.1
3,385,011	+		Shew_2854	0.47	-0.6
3,385,011	+		Shew_2854	0.47	+0.3
3,385,021	+		Shew_2854	0.49	+2.1
3,385,049	+		Shew_2854	0.55	+0.7
3,385,064	+		Shew_2854	0.58	-0.9
3,385,072	+		Shew_2854	0.60	+0.4
3,385,082	-		Shew_2854	0.62	+0.1
3,385,082	-		Shew_2854	0.62	-0.4
3,385,082	+		Shew_2854	0.62	-2.1
3,385,098	+		Shew_2854	0.65	+0.2
3,385,098	+		Shew_2854	0.65	-0.2
3,385,098	+		Shew_2854	0.65	+0.8
3,385,098	+		Shew_2854	0.65	+0.7
3,385,098	+		Shew_2854	0.65	-1.8
3,385,098	+		Shew_2854	0.65	-0.1
3,385,106	-		Shew_2854	0.66	+0.3
3,385,106	-		Shew_2854	0.66	+0.0
3,385,106	-		Shew_2854	0.66	+1.2
3,385,106	-		Shew_2854	0.66	-2.5
3,385,116	+		Shew_2854	0.68	-0.4
3,385,161	+		Shew_2854	0.78	+0.2
3,385,169	-		Shew_2854	0.79	+1.5
3,385,209	-		Shew_2854	0.87	+0.0
3,385,209	-		Shew_2854	0.87	-0.9
3,385,223	+				-0.3
3,385,226	+				-0.3
3,385,231	-				-0.2
3,385,231	-				+0.0
3,385,239	-				+0.3
3,385,334	+				+0.2
3,385,334	+				+1.5
3,385,342	-				-0.4
3,385,416	+				+1.2
3,385,417	+				+0.6
3,385,425	-				-0.5
3,385,459	+		Shew_2855	0.13	+0.3
3,385,514	-		Shew_2855	0.25	+0.4
3,385,539	+		Shew_2855	0.31	-0.0
3,385,547	-		Shew_2855	0.32	+0.5
3,385,547	-		Shew_2855	0.32	+0.3
3,385,547	+		Shew_2855	0.32	+0.3
3,385,557	-		Shew_2855	0.35	-0.8
3,385,565	+		Shew_2855	0.36	+0.6
3,385,566	+		Shew_2855	0.37	-0.9
3,385,574	-		Shew_2855	0.38	+0.1
3,385,577	+		Shew_2855	0.39	+1.1
3,385,577	+		Shew_2855	0.39	-0.3
3,385,577	+		Shew_2855	0.39	+0.1
3,385,627	-		Shew_2855	0.50	-0.3
3,385,650	+		Shew_2855	0.55	+0.9
3,385,650	+		Shew_2855	0.55	+1.6
3,385,658	-		Shew_2855	0.56	-0.2
3,385,658	-		Shew_2855	0.56	+1.2
3,385,658	-		Shew_2855	0.56	+0.2
3,385,658	-		Shew_2855	0.56	-1.1
3,385,661	+		Shew_2855	0.57	+1.7
3,385,669	-		Shew_2855	0.59	+0.4
3,385,752	+		Shew_2855	0.77	+1.0
3,385,752	+		Shew_2855	0.77	+1.4
3,385,760	-		Shew_2855	0.79	+1.1
3,385,796	+		Shew_2855	0.86	+0.1
3,385,798	+		Shew_2855	0.87	+0.4
3,385,799	-		Shew_2855	0.87	+0.9
3,385,813	+				-0.7
3,385,813	+				+0.5
3,385,821	-				-0.5
3,385,917	+				-1.1
3,386,045	-				+1.7
3,386,045	-				+0.0
3,386,137	-				+0.6
3,386,450	+				+1.4
3,386,450	+				-0.4
3,386,779	+				-0.2
3,386,798	+				+1.6
3,386,808	+				-0.2