Strain Fitness in Shewanella loihica PV-4 around Shew_2852

Experiment: Cephalothin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 0.1 mg/ml
3,381,441	-		Shew_2851	0.67	-0.3
3,381,855	+				-0.5
3,382,145	-				+0.9
3,382,314	-				-1.4
3,382,644	-		Shew_2852	0.18	-0.0
3,382,752	+		Shew_2852	0.26	+1.1
3,382,975	-		Shew_2852	0.41	+0.3
3,382,996	-		Shew_2852	0.43	-0.3
3,383,422	-		Shew_2852	0.72	+0.6
3,383,504	-		Shew_2852	0.77	+0.1
3,383,556	+		Shew_2852	0.81	-0.8
3,383,665	+		Shew_2852	0.88	-1.1
3,383,665	+		Shew_2852	0.88	+0.3
3,383,665	+		Shew_2852	0.88	+0.3
3,383,665	+		Shew_2852	0.88	+0.4
3,383,673	-		Shew_2852	0.89	-0.5
3,383,673	-		Shew_2852	0.89	-0.5
3,383,691	+				-0.8
3,383,699	-				+1.2
3,383,699	-				+0.4
3,383,747	+				+1.3
3,383,755	-				+0.5
3,383,755	-				+0.3
3,383,755	-				-0.7
3,383,755	-				-0.3
3,383,755	-				-0.5
3,383,796	+				+0.5
3,383,838	-				+0.8
3,383,907	+				-0.1
3,383,938	-				-1.4
3,383,943	+				+0.2
3,383,943	+				+0.3
3,383,951	-				-0.3
3,383,951	-				-0.6
3,384,014	+				+0.7
3,384,014	+				+0.8
3,384,021	-				+1.6
3,384,030	-				+0.0
3,384,037	+				+0.6
3,384,083	+				-0.2
3,384,093	+				-0.2
3,384,093	+				-1.0
3,384,099	-				+0.7
3,384,102	+				+0.5
3,384,102	+				+1.5
3,384,102	+				+0.4
3,384,102	+				-0.1
3,384,102	+				-0.1
3,384,102	+				+0.2
3,384,102	+				-0.1
3,384,102	+				+0.0
3,384,110	-				+0.0
3,384,110	-				+0.8
3,384,110	-				-1.4
3,384,110	-				-0.1
3,384,116	+				+0.0
3,384,116	+				+0.1
3,384,117	+				-1.6
3,384,117	+				+0.2
3,384,159	+				+0.0
3,384,176	+				-0.0
3,384,180	+				+0.2
3,384,188	-				+0.3
3,384,199	-				-0.3
3,384,213	-				+0.0
3,384,326	+				-0.5
3,384,326	+				+1.9
3,384,326	+				-2.1
3,384,326	+				-0.5
3,384,326	+				-0.2
3,384,326	+				+0.6
3,384,326	+				+0.4
3,384,326	+				-1.0
3,384,326	+				-1.5
3,384,326	+				+0.3
3,384,326	+				-0.7
3,384,326	+				+0.1
3,384,326	+				-0.7
3,384,326	+				+0.2
3,384,326	+				+1.8
3,384,334	-				-0.2
3,384,334	-				-0.1
3,384,334	-				-0.6
3,384,334	-				+0.4
3,384,334	-				+0.1
3,384,334	-				+1.2
3,384,334	-				-0.3
3,384,334	-				+0.1
3,384,334	-				+0.3
3,384,334	-				+0.5
3,384,334	-				-0.0
3,384,334	-				+0.0
3,384,334	-				+1.2
3,384,339	+				-0.5
3,384,346	-				-0.2
3,384,382	-				+0.1
3,384,393	+				-0.1
3,384,416	-				+0.3
3,384,452	+		Shew_2853	0.17	+0.0
3,384,452	+		Shew_2853	0.17	-0.5
3,384,452	+		Shew_2853	0.17	+0.4
3,384,494	+		Shew_2853	0.29	-0.5
3,384,499	-		Shew_2853	0.31	-0.1
3,384,503	+		Shew_2853	0.32	-0.2
3,384,508	+		Shew_2853	0.33	+0.9
3,384,508	+		Shew_2853	0.33	-0.9
3,384,516	+		Shew_2853	0.35	+0.3
3,384,518	+		Shew_2853	0.36	-0.3
3,384,518	+		Shew_2853	0.36	+0.4
3,384,518	+		Shew_2853	0.36	-1.4
3,384,518	+		Shew_2853	0.36	+0.5
3,384,518	+		Shew_2853	0.36	+0.1
3,384,518	+		Shew_2853	0.36	+0.7
3,384,518	+		Shew_2853	0.36	-0.2
3,384,518	+		Shew_2853	0.36	-0.1
3,384,524	-		Shew_2853	0.38	+0.2
3,384,524	-		Shew_2853	0.38	+0.6
3,384,526	-		Shew_2853	0.38	-0.6
3,384,526	-		Shew_2853	0.38	-0.6
3,384,526	+		Shew_2853	0.38	-2.0
3,384,526	-		Shew_2853	0.38	-1.3
3,384,526	-		Shew_2853	0.38	-0.6
3,384,526	-		Shew_2853	0.38	+0.6
3,384,526	-		Shew_2853	0.38	+0.6
3,384,526	-		Shew_2853	0.38	-0.2
3,384,526	-		Shew_2853	0.38	-0.1
3,384,526	-		Shew_2853	0.38	+0.6
3,384,526	-		Shew_2853	0.38	-0.0
3,384,526	-		Shew_2853	0.38	+0.0
3,384,526	-		Shew_2853	0.38	-1.0
3,384,526	-		Shew_2853	0.38	+0.2
3,384,526	-		Shew_2853	0.38	+0.5
3,384,526	-		Shew_2853	0.38	+0.3
3,384,526	-		Shew_2853	0.38	-1.9
3,384,526	-		Shew_2853	0.38	-0.5
3,384,526	-		Shew_2853	0.38	+0.8
3,384,526	-		Shew_2853	0.38	+0.5
3,384,527	-		Shew_2853	0.38	+0.8
3,384,527	-		Shew_2853	0.38	+0.4
3,384,531	-		Shew_2853	0.39	+0.8
3,384,539	+		Shew_2853	0.42	+0.0
3,384,544	+		Shew_2853	0.43	+0.2
3,384,575	+		Shew_2853	0.52	-0.4
3,384,599	-		Shew_2853	0.58	+1.1
3,384,599	-		Shew_2853	0.58	+0.1
3,384,609	-		Shew_2853	0.61	+0.7
3,384,613	+		Shew_2853	0.62	-0.3
3,384,613	+		Shew_2853	0.62	+1.8
3,384,613	+		Shew_2853	0.62	+0.8
3,384,613	+		Shew_2853	0.62	-0.4
3,384,613	+		Shew_2853	0.62	-0.3
3,384,613	+		Shew_2853	0.62	+0.7
3,384,613	+		Shew_2853	0.62	-0.0
3,384,613	+		Shew_2853	0.62	+0.9
3,384,613	+		Shew_2853	0.62	+0.3
3,384,613	+		Shew_2853	0.62	-1.1
3,384,616	-		Shew_2853	0.63	-0.3
3,384,621	-		Shew_2853	0.64	-0.5
3,384,621	-		Shew_2853	0.64	-0.3
3,384,621	-		Shew_2853	0.64	+0.1
3,384,621	-		Shew_2853	0.64	+0.2
3,384,621	-		Shew_2853	0.64	-0.1
3,384,621	-		Shew_2853	0.64	+0.5
3,384,621	-		Shew_2853	0.64	-1.1
3,384,623	+		Shew_2853	0.65	-0.7
3,384,623	+		Shew_2853	0.65	+0.2
3,384,647	+		Shew_2853	0.72	+0.0
3,384,668	+		Shew_2853	0.78	+0.5
3,384,668	+		Shew_2853	0.78	+1.0
3,384,668	+		Shew_2853	0.78	-0.2
3,384,668	+		Shew_2853	0.78	+0.0
3,384,668	+		Shew_2853	0.78	+0.6
3,384,668	+		Shew_2853	0.78	-1.1
3,384,668	+		Shew_2853	0.78	-0.4
3,384,668	+		Shew_2853	0.78	-0.1
3,384,668	+		Shew_2853	0.78	+0.3
3,384,676	-		Shew_2853	0.80	+0.8
3,384,676	-		Shew_2853	0.80	+0.7
3,384,676	-		Shew_2853	0.80	+0.7
3,384,682	+		Shew_2853	0.81	-0.6
3,384,682	+		Shew_2853	0.81	+0.5
3,384,682	+		Shew_2853	0.81	+0.2
3,384,682	+		Shew_2853	0.81	-0.9
3,384,682	+		Shew_2853	0.81	+0.8
3,384,682	+		Shew_2853	0.81	+0.4
3,384,682	+		Shew_2853	0.81	-1.9
3,384,682	+		Shew_2853	0.81	+0.5
3,384,682	+		Shew_2853	0.81	+0.1
3,384,682	+		Shew_2853	0.81	-1.2
3,384,682	+		Shew_2853	0.81	-0.4
3,384,682	+		Shew_2853	0.81	+0.6
3,384,682	+		Shew_2853	0.81	-0.8
3,384,682	+		Shew_2853	0.81	-0.4
3,384,682	+		Shew_2853	0.81	-0.3
3,384,682	+		Shew_2853	0.81	-0.3
3,384,682	+		Shew_2853	0.81	+0.9
3,384,682	+		Shew_2853	0.81	+0.0
3,384,682	+		Shew_2853	0.81	-0.5
3,384,683	+		Shew_2853	0.82	+1.1
3,384,683	+		Shew_2853	0.82	-0.1
3,384,690	-		Shew_2853	0.84	+1.5
3,384,690	-		Shew_2853	0.84	-0.3
3,384,690	-		Shew_2853	0.84	+0.3
3,384,690	-		Shew_2853	0.84	-1.1
3,384,690	-		Shew_2853	0.84	+1.6
3,384,690	-		Shew_2853	0.84	+0.7
3,384,690	-		Shew_2853	0.84	+1.9
3,384,690	-		Shew_2853	0.84	-0.4
3,384,690	-		Shew_2853	0.84	+0.8
3,384,690	-		Shew_2853	0.84	-0.0
3,384,690	-		Shew_2853	0.84	+0.1
3,384,690	-		Shew_2853	0.84	+0.1
3,384,690	-		Shew_2853	0.84	+1.1
3,384,690	-		Shew_2853	0.84	+0.1
3,384,690	-		Shew_2853	0.84	+0.0
3,384,690	-		Shew_2853	0.84	+0.0
3,384,690	-		Shew_2853	0.84	-0.1
3,384,690	-		Shew_2853	0.84	+0.8
3,384,690	-		Shew_2853	0.84	+0.8
3,384,690	-		Shew_2853	0.84	-1.1
3,384,690	-		Shew_2853	0.84	-0.8
3,384,701	-		Shew_2853	0.87	+0.3
3,384,701	-		Shew_2853	0.87	-1.2
3,384,702	+		Shew_2853	0.87	+0.7
3,384,702	+		Shew_2853	0.87	+0.0
3,384,703	+		Shew_2853	0.87	+0.2
3,384,703	+		Shew_2853	0.87	-0.4
3,384,703	+		Shew_2853	0.87	+2.0
3,384,703	+		Shew_2853	0.87	-1.2
3,384,703	+		Shew_2853	0.87	+0.3
3,384,703	+		Shew_2853	0.87	+0.3
3,384,703	+		Shew_2853	0.87	-0.2
3,384,703	+		Shew_2853	0.87	+0.7
3,384,703	+		Shew_2853	0.87	+0.2
3,384,703	+		Shew_2853	0.87	-0.5
3,384,703	+		Shew_2853	0.87	-0.1
3,384,703	+		Shew_2853	0.87	-0.9
3,384,703	+		Shew_2853	0.87	-0.4
3,384,711	-		Shew_2853	0.89	-0.1
3,384,711	-		Shew_2853	0.89	+1.5
3,384,711	-		Shew_2853	0.89	-1.1
3,384,711	-		Shew_2853	0.89	+0.2
3,384,711	-		Shew_2853	0.89	+0.1
3,384,711	-		Shew_2853	0.89	-0.4
3,384,711	-		Shew_2853	0.89	+0.5
3,384,712	+		Shew_2853	0.90	+0.4
3,384,712	+		Shew_2853	0.90	+2.0
3,384,712	+		Shew_2853	0.90	+0.9
3,384,712	+		Shew_2853	0.90	+0.3
3,384,712	+		Shew_2853	0.90	+0.1
3,384,712	+		Shew_2853	0.90	-0.3
3,384,720	-				-0.0
3,384,720	-				-0.9
3,384,720	-				+0.3
3,384,720	-				+0.3
3,384,720	-				-0.7
3,384,720	-				+0.3
3,384,720	-				+0.4
3,384,720	-				-0.9
3,384,720	-				+0.1
3,384,720	-				-0.4
3,384,720	-				-0.0
3,384,720	-				+0.7
3,384,721	+				-2.2
3,384,722	+				+0.4
3,384,731	-				+0.4
3,384,731	-				-0.1
3,384,751	+				+0.3
3,384,751	+				-1.3
3,384,756	+				+0.4
3,384,756	+				+1.1
3,384,759	-				+0.6
3,384,762	+				+0.1
3,384,764	-				-0.4
3,384,772	+				+0.6
3,384,774	+				+1.0
3,384,774	+				-0.2
3,384,774	+				-0.7
3,384,774	+				+0.9
3,384,774	+				-0.4
3,384,780	-				+0.5
3,384,780	-				+0.4
3,384,780	-				-0.8
3,384,780	-				+0.1
3,384,782	+				+0.5
3,384,782	-				+0.7
3,384,782	+				+0.2
3,384,782	-				-3.0
3,384,782	-				+0.8
3,384,782	-				-0.5
3,384,782	-				+0.1
3,384,790	-				-0.3
3,384,800	-				+0.1
3,384,834	+		Shew_2854	0.12	-0.2
3,384,835	+		Shew_2854	0.12	-1.4
3,384,835	+		Shew_2854	0.12	+0.8
3,384,835	+		Shew_2854	0.12	+0.4