Strain Fitness in Shewanella loihica PV-4 around Shew_2370

Experiment: Cephalothin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2369 and Shew_2370 are separated by 120 nucleotidesShew_2370 and Shew_2371 are separated by 111 nucleotides Shew_2369: Shew_2369 - cyclic nucleotide-binding protein (RefSeq), at 2,769,980 to 2,771,827 _2369 Shew_2370: Shew_2370 - methyltransferase type 11 (RefSeq), at 2,771,948 to 2,772,607 _2370 Shew_2371: Shew_2371 - actP-like component of L-lactate and L-malate uptake system (from data), at 2,772,719 to 2,774,437 _2371 Position (kb) 2771 2772 2773Strain fitness (log2 ratio) -1 0 1at 2771.485 kb on + strand, within Shew_2369at 2771.536 kb on + strand, within Shew_2369at 2771.541 kb on + strand, within Shew_2369at 2771.596 kb on + strand, within Shew_2369at 2771.658 kb on + strandat 2771.751 kb on - strandat 2772.566 kb on + strandat 2772.703 kb on - strandat 2772.854 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml
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2,771,485 + Shew_2369 0.81 +0.5
2,771,536 + Shew_2369 0.84 -0.1
2,771,541 + Shew_2369 0.84 -1.1
2,771,596 + Shew_2369 0.87 +0.2
2,771,658 + -0.0
2,771,751 - -0.3
2,772,566 + +0.2
2,772,703 - +0.1
2,772,854 + -1.2

Or see this region's nucleotide sequence