Experiment: Cephalothin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1739 and Shew_1740 are separated by 95 nucleotides Shew_1740 and Shew_1741 are separated by 257 nucleotides Shew_1741 and Shew_1742 are separated by 40 nucleotides Shew_1742 and Shew_1743 are separated by 76 nucleotides
Shew_1739: Shew_1739 - DoxX family protein (RefSeq), at 1,989,977 to 1,990,567
_1739
Shew_1740: Shew_1740 - nitroreductase (RefSeq), at 1,990,663 to 1,991,211
_1740
Shew_1741: Shew_1741 - beta-lactamase domain-containing protein (RefSeq), at 1,991,469 to 1,992,200
_1741
Shew_1742: Shew_1742 - methyl-accepting chemotaxis protein (RefSeq), at 1,992,241 to 1,992,858
_1742
Shew_1743: Shew_1743 - GCN5-related N-acetyltransferase (RefSeq), at 1,992,935 to 1,993,438
_1743
Position (kb) 1991
1992
1993 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1990.569 kb on - strand at 1991.908 kb on + strand, within Shew_1741 at 1991.920 kb on + strand, within Shew_1741 at 1991.928 kb on - strand, within Shew_1741 at 1992.058 kb on - strand, within Shew_1741 at 1992.611 kb on + strand, within Shew_1742 at 1992.993 kb on + strand, within Shew_1743 at 1993.059 kb on + strand, within Shew_1743 at 1993.067 kb on - strand, within Shew_1743
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml remove 1,990,569 - -2.0 1,991,908 + Shew_1741 0.60 -0.8 1,991,920 + Shew_1741 0.62 -0.4 1,991,928 - Shew_1741 0.63 +0.9 1,992,058 - Shew_1741 0.80 -1.2 1,992,611 + Shew_1742 0.60 +0.0 1,992,993 + Shew_1743 0.12 +1.9 1,993,059 + Shew_1743 0.25 +0.4 1,993,067 - Shew_1743 0.26 +0.5
Or see this region's nucleotide sequence