Strain Fitness in Shewanella loihica PV-4 around Shew_1730

Experiment: Cephalothin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1729 and Shew_1730 are separated by 215 nucleotidesShew_1730 and Shew_1731 are separated by 262 nucleotidesShew_1731 and Shew_1732 are separated by 30 nucleotides Shew_1729: Shew_1729 - curli production assembly/transport component CsgG (RefSeq), at 1,981,396 to 1,982,244 _1729 Shew_1730: Shew_1730 - hypothetical protein (RefSeq), at 1,982,460 to 1,983,026 _1730 Shew_1731: Shew_1731 - histidine triad (HIT) protein (RefSeq), at 1,983,289 to 1,983,639 _1731 Shew_1732: Shew_1732 - hypothetical protein (RefSeq), at 1,983,670 to 1,984,167 _1732 Position (kb) 1982 1983 1984Strain fitness (log2 ratio) -1 0 1at 1981.632 kb on + strand, within Shew_1729at 1981.958 kb on + strand, within Shew_1729at 1982.171 kb on + strandat 1982.956 kb on - strand, within Shew_1730at 1983.389 kb on - strand, within Shew_1731at 1983.660 kb on + strandat 1983.668 kb on - strandat 1983.806 kb on + strand, within Shew_1732at 1983.991 kb on + strand, within Shew_1732

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml
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1,981,632 + Shew_1729 0.28 -1.0
1,981,958 + Shew_1729 0.66 -1.2
1,982,171 + +0.6
1,982,956 - Shew_1730 0.87 -0.8
1,983,389 - Shew_1731 0.28 +0.4
1,983,660 + -1.4
1,983,668 - +1.0
1,983,806 + Shew_1732 0.27 -0.1
1,983,991 + Shew_1732 0.64 -0.6

Or see this region's nucleotide sequence