Experiment: Cephalothin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1006 and Shew_1007 are separated by 297 nucleotides Shew_1007 and Shew_1008 are separated by 209 nucleotides Shew_1008 and Shew_1009 are separated by 187 nucleotides
Shew_1006: Shew_1006 - ErfK/YbiS/YcfS/YnhG family protein (RefSeq), at 1,163,002 to 1,163,943
_1006
Shew_1007: Shew_1007 - major outer membrane lipoprotein, putative (RefSeq), at 1,164,241 to 1,164,507
_1007
Shew_1008: Shew_1008 - metal dependent phosphohydrolase (RefSeq), at 1,164,717 to 1,165,958
_1008
Shew_1009: Shew_1009 - peptidoglycan binding domain-containing protein (RefSeq), at 1,166,146 to 1,167,909
_1009
Position (kb) 1164
1165
1166 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1163.982 kb on - strand at 1164.079 kb on - strand at 1164.440 kb on - strand, within Shew_1007 at 1166.461 kb on - strand, within Shew_1009 at 1166.524 kb on - strand, within Shew_1009 at 1166.578 kb on - strand, within Shew_1009 at 1166.597 kb on - strand, within Shew_1009 at 1166.715 kb on + strand, within Shew_1009 at 1166.733 kb on - strand, within Shew_1009 at 1166.766 kb on - strand, within Shew_1009
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml remove 1,163,982 - -0.8 1,164,079 - +0.1 1,164,440 - Shew_1007 0.75 -3.0 1,166,461 - Shew_1009 0.18 +0.5 1,166,524 - Shew_1009 0.21 +1.6 1,166,578 - Shew_1009 0.24 -2.5 1,166,597 - Shew_1009 0.26 -2.3 1,166,715 + Shew_1009 0.32 -0.5 1,166,733 - Shew_1009 0.33 -0.3 1,166,766 - Shew_1009 0.35 -1.0
Or see this region's nucleotide sequence