Experiment: Cephalothin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0835 and Shew_0836 are separated by 241 nucleotides Shew_0836 and Shew_0837 are separated by 25 nucleotides Shew_0837 and Shew_0838 are separated by 64 nucleotides Shew_0838 and Shew_0839 are separated by 13 nucleotides
Shew_0835: Shew_0835 - peptidase M1, membrane alanine aminopeptidase (RefSeq), at 956,689 to 959,337
_0835
Shew_0836: Shew_0836 - membrane lipoprotein lipid attachment site (RefSeq), at 959,579 to 960,172
_0836
Shew_0837: Shew_0837 - TPR repeat-containing protein (RefSeq), at 960,198 to 961,607
_0837
Shew_0838: Shew_0838 - SlyX family protein (RefSeq), at 961,672 to 961,884
_0838
Shew_0839: Shew_0839 - WD-40 repeat-containing protein (RefSeq), at 961,898 to 962,866
_0839
Position (kb) 960
961
962 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 959.198 kb on - strand at 959.275 kb on + strand at 959.297 kb on + strand at 959.397 kb on - strand at 959.992 kb on + strand, within Shew_0836 at 960.013 kb on - strand, within Shew_0836 at 960.412 kb on - strand, within Shew_0837 at 960.412 kb on - strand, within Shew_0837 at 960.504 kb on - strand, within Shew_0837 at 960.640 kb on - strand, within Shew_0837 at 960.640 kb on - strand, within Shew_0837 at 960.655 kb on - strand, within Shew_0837 at 961.199 kb on - strand, within Shew_0837 at 961.911 kb on + strand at 962.539 kb on - strand, within Shew_0839
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml remove 959,198 - +0.2 959,275 + +0.0 959,297 + +1.8 959,397 - -0.4 959,992 + Shew_0836 0.70 +0.0 960,013 - Shew_0836 0.73 +0.6 960,412 - Shew_0837 0.15 -1.1 960,412 - Shew_0837 0.15 -2.7 960,504 - Shew_0837 0.22 -2.5 960,640 - Shew_0837 0.31 -2.7 960,640 - Shew_0837 0.31 -2.1 960,655 - Shew_0837 0.32 -1.2 961,199 - Shew_0837 0.71 -2.8 961,911 + -1.8 962,539 - Shew_0839 0.66 +0.2
Or see this region's nucleotide sequence