Experiment: Cephalothin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0659 and Shew_0660 overlap by 4 nucleotides Shew_0660 and Shew_0661 are separated by 70 nucleotides Shew_0661 and Shew_0662 are separated by 234 nucleotides
Shew_0659: Shew_0659 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq), at 749,321 to 750,751
_0659
Shew_0660: Shew_0660 - hypothetical protein (RefSeq), at 750,748 to 751,584
_0660
Shew_0661: Shew_0661 - hypothetical protein (RefSeq), at 751,655 to 751,969
_0661
Shew_0662: Shew_0662 - NAD(P) transhydrogenase, beta subunit (RefSeq), at 752,204 to 753,586
_0662
Position (kb) 751
752 Strain fitness (log2 ratio) -1
0
1 at 750.811 kb on + strand at 750.819 kb on - strand at 751.026 kb on + strand, within Shew_0660 at 751.034 kb on - strand, within Shew_0660 at 751.178 kb on + strand, within Shew_0660 at 751.185 kb on + strand, within Shew_0660 at 751.238 kb on + strand, within Shew_0660 at 751.246 kb on - strand, within Shew_0660 at 751.246 kb on - strand, within Shew_0660 at 751.246 kb on - strand, within Shew_0660 at 751.370 kb on + strand, within Shew_0660 at 751.524 kb on + strand at 751.864 kb on - strand, within Shew_0661 at 752.282 kb on - strand at 752.481 kb on + strand, within Shew_0662 at 752.585 kb on - strand, within Shew_0662 at 752.882 kb on + strand, within Shew_0662
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml remove 750,811 + +0.3 750,819 - +0.2 751,026 + Shew_0660 0.33 -0.3 751,034 - Shew_0660 0.34 -0.5 751,178 + Shew_0660 0.51 -0.0 751,185 + Shew_0660 0.52 -0.5 751,238 + Shew_0660 0.59 +0.3 751,246 - Shew_0660 0.59 +0.8 751,246 - Shew_0660 0.59 +0.1 751,246 - Shew_0660 0.59 -0.0 751,370 + Shew_0660 0.74 +1.3 751,524 + -0.9 751,864 - Shew_0661 0.66 +1.2 752,282 - -0.1 752,481 + Shew_0662 0.20 +0.7 752,585 - Shew_0662 0.28 -1.4 752,882 + Shew_0662 0.49 +0.1
Or see this region's nucleotide sequence