Experiment: Cephalothin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0444 and Shew_0445 are separated by 124 nucleotides Shew_0445 and Shew_0446 are separated by 546 nucleotides Shew_0446 and Shew_0447 are separated by 77 nucleotides
Shew_0444: Shew_0444 - MscS mechanosensitive ion channel (RefSeq), at 495,031 to 496,653
_0444
Shew_0445: Shew_0445 - hypothetical protein (RefSeq), at 496,778 to 497,113
_0445
Shew_0446: Shew_0446 - hypothetical protein (RefSeq), at 497,660 to 497,920
_0446
Shew_0447: Shew_0447 - hypothetical protein (RefSeq), at 497,998 to 499,203
_0447
Position (kb) 496
497
498 Strain fitness (log2 ratio) -2
-1
0
1 at 496.039 kb on + strand, within Shew_0444 at 496.097 kb on - strand, within Shew_0444 at 496.139 kb on - strand, within Shew_0444 at 496.407 kb on - strand, within Shew_0444 at 496.433 kb on - strand, within Shew_0444 at 496.606 kb on + strand at 496.702 kb on - strand at 496.737 kb on + strand at 496.796 kb on + strand at 496.984 kb on + strand, within Shew_0445 at 497.051 kb on - strand, within Shew_0445 at 497.221 kb on + strand at 497.229 kb on - strand at 497.229 kb on - strand at 497.250 kb on - strand at 497.676 kb on + strand at 497.684 kb on - strand at 497.811 kb on + strand, within Shew_0446 at 498.096 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml remove 496,039 + Shew_0444 0.62 -0.3 496,097 - Shew_0444 0.66 +1.0 496,139 - Shew_0444 0.68 +0.1 496,407 - Shew_0444 0.85 +0.4 496,433 - Shew_0444 0.86 +0.6 496,606 + +0.5 496,702 - +0.6 496,737 + +0.8 496,796 + -1.7 496,984 + Shew_0445 0.61 +0.6 497,051 - Shew_0445 0.81 +0.9 497,221 + -0.3 497,229 - +0.1 497,229 - +0.1 497,250 - -0.4 497,676 + -0.3 497,684 - +0.8 497,811 + Shew_0446 0.58 -0.1 498,096 + -2.0
Or see this region's nucleotide sequence