Experiment: Cephalothin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0367 and Shew_0368 overlap by 4 nucleotides Shew_0368 and Shew_0369 overlap by 4 nucleotides Shew_0369 and Shew_0370 are separated by 10 nucleotides Shew_0370 and Shew_0371 are separated by 124 nucleotides
Shew_0367: Shew_0367 - cytochrome-c oxidase (RefSeq), at 415,238 to 417,226
_0367
Shew_0368: Shew_0368 - cytochrome c oxidase, subunit III (RefSeq), at 417,223 to 417,849
_0368
Shew_0369: Shew_0369 - cytochrome C oxidase subunit IV (RefSeq), at 417,846 to 418,172
_0369
Shew_0370: Shew_0370 - protoheme IX farnesyltransferase (RefSeq), at 418,183 to 419,109
_0370
Shew_0371: Shew_0371 - AraC family transcriptional regulator (RefSeq), at 419,234 to 420,100
_0371
Position (kb) 418
419
420 Strain fitness (log2 ratio) -1
0
1 at 417.251 kb on + strand at 417.259 kb on - strand at 417.303 kb on - strand, within Shew_0368 at 417.470 kb on - strand, within Shew_0368 at 417.550 kb on + strand, within Shew_0368 at 417.558 kb on - strand, within Shew_0368 at 417.572 kb on + strand, within Shew_0368 at 417.580 kb on - strand, within Shew_0368 at 417.922 kb on + strand, within Shew_0369 at 417.944 kb on + strand, within Shew_0369 at 418.128 kb on - strand, within Shew_0369 at 418.505 kb on + strand, within Shew_0370 at 418.670 kb on - strand, within Shew_0370 at 419.036 kb on - strand at 419.164 kb on + strand at 419.466 kb on + strand, within Shew_0371 at 419.761 kb on + strand, within Shew_0371 at 419.890 kb on + strand, within Shew_0371 at 420.095 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml remove 417,251 + -0.8 417,259 - -0.9 417,303 - Shew_0368 0.13 -0.2 417,470 - Shew_0368 0.39 +0.4 417,550 + Shew_0368 0.52 +0.1 417,558 - Shew_0368 0.53 -0.2 417,572 + Shew_0368 0.56 -0.3 417,580 - Shew_0368 0.57 +0.7 417,922 + Shew_0369 0.23 +1.2 417,944 + Shew_0369 0.30 +0.3 418,128 - Shew_0369 0.86 -0.1 418,505 + Shew_0370 0.35 -0.6 418,670 - Shew_0370 0.53 -0.4 419,036 - +0.8 419,164 + +0.2 419,466 + Shew_0371 0.27 -0.2 419,761 + Shew_0371 0.61 -0.1 419,890 + Shew_0371 0.76 +0.3 420,095 + +0.7
Or see this region's nucleotide sequence