Strain Fitness in Shewanella loihica PV-4 around Shew_0285

Experiment: Cephalothin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0284 and Shew_0285 are separated by 28 nucleotidesShew_0285 and Shew_0286 are separated by 197 nucleotides Shew_0284: Shew_0284 - hypothetical protein (RefSeq), at 302,166 to 303,491 _0284 Shew_0285: Shew_0285 - diguanylate cyclase (RefSeq), at 303,520 to 304,401 _0285 Shew_0286: Shew_0286 - extracellular solute-binding protein (RefSeq), at 304,599 to 305,408 _0286 Position (kb) 303 304 305Strain fitness (log2 ratio) -2 -1 0 1 2at 302.621 kb on + strand, within Shew_0284at 302.650 kb on - strand, within Shew_0284at 302.698 kb on + strand, within Shew_0284at 302.859 kb on - strand, within Shew_0284at 303.036 kb on + strand, within Shew_0284at 303.046 kb on + strand, within Shew_0284at 303.046 kb on + strand, within Shew_0284at 303.046 kb on + strand, within Shew_0284at 303.257 kb on - strand, within Shew_0284at 303.279 kb on + strand, within Shew_0284at 303.388 kb on + strandat 303.542 kb on - strandat 303.561 kb on + strandat 303.584 kb on - strandat 303.584 kb on + strandat 303.784 kb on - strand, within Shew_0285at 304.174 kb on + strand, within Shew_0285at 304.786 kb on + strand, within Shew_0286at 304.794 kb on - strand, within Shew_0286at 305.014 kb on - strand, within Shew_0286at 305.014 kb on - strand, within Shew_0286at 305.373 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml
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302,621 + Shew_0284 0.34 +0.2
302,650 - Shew_0284 0.37 +1.3
302,698 + Shew_0284 0.40 +1.0
302,859 - Shew_0284 0.52 -0.6
303,036 + Shew_0284 0.66 -0.2
303,046 + Shew_0284 0.66 +0.9
303,046 + Shew_0284 0.66 +1.0
303,046 + Shew_0284 0.66 -0.1
303,257 - Shew_0284 0.82 +0.2
303,279 + Shew_0284 0.84 -0.1
303,388 + -2.7
303,542 - +0.3
303,561 + +0.3
303,584 - +0.4
303,584 + +0.1
303,784 - Shew_0285 0.30 -1.6
304,174 + Shew_0285 0.74 -0.8
304,786 + Shew_0286 0.23 +0.3
304,794 - Shew_0286 0.24 +2.0
305,014 - Shew_0286 0.51 -0.0
305,014 - Shew_0286 0.51 -0.1
305,373 + +0.2

Or see this region's nucleotide sequence