Experiment: Paraquat dichloride 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0737 and SO0737.1 are separated by 227 nucleotides SO0737.1 and SO_0738 overlap by 1 nucleotides SO_0738 and SO_0739 are separated by 39 nucleotides
SO0737: SO0737 - TonB-dependent receptor, putative (NCBI ptt file), at 751,569 to 753,647
SO0737
SO0737.1: SO0737.1 - hypothetical alkaline phosphatase (NCBI ptt file), at 753,875 to 754,522
SO0737.1
SO_0738: SO_0738 - no description, at 754,522 to 755,379
_0738
SO_0739: SO_0739 - no description, at 755,419 to 756,255
_0739
Position (kb) 753
754
755 Strain fitness (log2 ratio) -1
0
1 at 752.876 kb on + strand, within SO0737 at 752.877 kb on + strand, within SO0737 at 752.999 kb on + strand, within SO0737 at 753.112 kb on + strand, within SO0737 at 753.124 kb on + strand, within SO0737 at 753.157 kb on + strand, within SO0737 at 753.182 kb on + strand, within SO0737 at 753.257 kb on - strand, within SO0737 at 753.373 kb on + strand, within SO0737 at 753.422 kb on + strand, within SO0737 at 753.430 kb on - strand, within SO0737 at 753.430 kb on - strand, within SO0737 at 753.430 kb on - strand, within SO0737 at 753.451 kb on + strand at 753.451 kb on + strand at 753.459 kb on - strand at 753.470 kb on + strand at 753.601 kb on + strand at 753.620 kb on - strand at 753.649 kb on + strand at 753.702 kb on - strand at 753.940 kb on - strand, within SO0737.1 at 753.953 kb on - strand, within SO0737.1 at 753.958 kb on - strand, within SO0737.1 at 753.958 kb on - strand, within SO0737.1 at 753.988 kb on + strand, within SO0737.1 at 753.989 kb on - strand, within SO0737.1 at 754.125 kb on - strand, within SO0737.1 at 754.194 kb on - strand, within SO0737.1 at 754.210 kb on + strand, within SO0737.1 at 754.214 kb on + strand, within SO0737.1 at 754.223 kb on - strand, within SO0737.1 at 754.248 kb on + strand, within SO0737.1 at 754.248 kb on + strand, within SO0737.1 at 754.255 kb on + strand, within SO0737.1 at 754.268 kb on + strand, within SO0737.1 at 754.468 kb on - strand at 754.528 kb on + strand at 754.564 kb on + strand at 754.610 kb on + strand, within SO_0738 at 754.613 kb on - strand, within SO_0738 at 754.628 kb on - strand, within SO_0738 at 754.628 kb on - strand, within SO_0738 at 754.743 kb on + strand, within SO_0738 at 754.743 kb on + strand, within SO_0738 at 754.751 kb on - strand, within SO_0738 at 754.751 kb on - strand, within SO_0738 at 755.009 kb on + strand, within SO_0738 at 755.014 kb on + strand, within SO_0738 at 755.014 kb on + strand, within SO_0738 at 755.021 kb on + strand, within SO_0738 at 755.022 kb on - strand, within SO_0738 at 755.084 kb on + strand, within SO_0738 at 755.121 kb on + strand, within SO_0738 at 755.121 kb on + strand, within SO_0738 at 755.121 kb on + strand, within SO_0738 at 755.121 kb on + strand, within SO_0738 at 755.121 kb on + strand, within SO_0738 at 755.129 kb on - strand, within SO_0738 at 755.129 kb on - strand, within SO_0738 at 755.131 kb on + strand, within SO_0738 at 755.136 kb on + strand, within SO_0738 at 755.136 kb on + strand, within SO_0738 at 755.149 kb on - strand, within SO_0738 at 755.188 kb on - strand, within SO_0738 at 755.224 kb on + strand, within SO_0738 at 755.359 kb on - strand at 755.373 kb on + strand at 755.381 kb on - strand at 755.381 kb on - strand at 755.381 kb on - strand at 755.446 kb on + strand at 755.483 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.125 mg/ml remove 752,876 + SO0737 0.63 +0.6 752,877 + SO0737 0.63 -0.0 752,999 + SO0737 0.69 -0.1 753,112 + SO0737 0.74 -0.4 753,124 + SO0737 0.75 -0.1 753,157 + SO0737 0.76 +0.3 753,182 + SO0737 0.78 -0.4 753,257 - SO0737 0.81 -0.8 753,373 + SO0737 0.87 -0.0 753,422 + SO0737 0.89 +0.5 753,430 - SO0737 0.90 +1.1 753,430 - SO0737 0.90 -0.2 753,430 - SO0737 0.90 +0.2 753,451 + -1.2 753,451 + +0.5 753,459 - -0.4 753,470 + +0.0 753,601 + -0.4 753,620 - -0.2 753,649 + +0.0 753,702 - -0.3 753,940 - SO0737.1 0.10 -0.0 753,953 - SO0737.1 0.12 +0.4 753,958 - SO0737.1 0.13 +0.1 753,958 - SO0737.1 0.13 +0.2 753,988 + SO0737.1 0.17 -0.2 753,989 - SO0737.1 0.18 +0.2 754,125 - SO0737.1 0.39 +0.9 754,194 - SO0737.1 0.49 +0.2 754,210 + SO0737.1 0.52 +0.8 754,214 + SO0737.1 0.52 +0.3 754,223 - SO0737.1 0.54 +0.5 754,248 + SO0737.1 0.58 +0.6 754,248 + SO0737.1 0.58 +0.2 754,255 + SO0737.1 0.59 -0.2 754,268 + SO0737.1 0.61 +0.2 754,468 - +0.0 754,528 + -0.4 754,564 + +0.4 754,610 + SO_0738 0.10 -0.2 754,613 - SO_0738 0.11 +0.1 754,628 - SO_0738 0.12 +0.3 754,628 - SO_0738 0.12 -0.3 754,743 + SO_0738 0.26 +0.4 754,743 + SO_0738 0.26 -0.9 754,751 - SO_0738 0.27 -0.2 754,751 - SO_0738 0.27 +0.6 755,009 + SO_0738 0.57 +0.2 755,014 + SO_0738 0.57 -0.2 755,014 + SO_0738 0.57 -0.2 755,021 + SO_0738 0.58 +1.2 755,022 - SO_0738 0.58 -0.4 755,084 + SO_0738 0.66 +0.2 755,121 + SO_0738 0.70 +0.5 755,121 + SO_0738 0.70 +0.2 755,121 + SO_0738 0.70 +0.2 755,121 + SO_0738 0.70 -0.2 755,121 + SO_0738 0.70 -0.7 755,129 - SO_0738 0.71 +0.1 755,129 - SO_0738 0.71 -1.1 755,131 + SO_0738 0.71 -0.1 755,136 + SO_0738 0.72 +0.2 755,136 + SO_0738 0.72 +0.2 755,149 - SO_0738 0.73 +0.6 755,188 - SO_0738 0.78 +0.3 755,224 + SO_0738 0.82 -0.9 755,359 - +0.5 755,373 + +0.1 755,381 - +0.5 755,381 - +0.2 755,381 - +0.3 755,446 + -0.2 755,483 - -0.3
Or see this region's nucleotide sequence