Strain Fitness in Shewanella oneidensis MR-1 around SO4559

Experiment: Paraquat dichloride 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.125 mg/ml
4,755,142	-				+0.2
4,755,176	-				-0.1
4,755,184	-				-0.0
4,755,311	+				-0.1
4,755,319	-				-0.1
4,755,319	-				+0.2
4,755,319	-				-0.5
4,755,329	-				+1.1
4,755,635	+				+0.1
4,755,643	-				-0.2
4,755,692	+				+1.0
4,755,693	+				-0.4
4,755,694	+				-0.4
4,755,708	+				-0.5
4,755,708	+				+0.1
4,755,708	+				-0.3
4,755,716	-				-0.9
4,755,716	-				-0.9
4,755,716	-				-0.2
4,755,829	-		SO4558	0.25	-0.7
4,755,836	+		SO4558	0.27	+0.0
4,755,883	+		SO4558	0.40	-0.5
4,755,893	+		SO4558	0.43	-0.4
4,755,947	-		SO4558	0.58	-0.1
4,756,053	-		SO4558	0.89	+1.0
4,756,064	+				-0.2
4,756,064	+				+0.9
4,756,064	+				-0.4
4,756,072	-				+0.4
4,756,095	+				-0.2
4,756,159	+				-0.5
4,756,159	+				-0.3
4,756,232	+				-1.2
4,756,275	+		SO4559	0.12	+0.3
4,756,293	-		SO4559	0.14	-2.5
4,756,323	-		SO4559	0.16	-0.6
4,756,355	+		SO4559	0.18	-0.3
4,756,370	+		SO4559	0.19	-0.5
4,756,445	-		SO4559	0.24	-0.6
4,756,445	-		SO4559	0.24	-0.9
4,756,455	-		SO4559	0.25	-0.7
4,756,455	-		SO4559	0.25	-1.0
4,756,637	-		SO4559	0.37	+0.1
4,756,637	-		SO4559	0.37	+0.7
4,756,704	-		SO4559	0.42	-1.2
4,756,721	+		SO4559	0.43	-1.0
4,756,765	-		SO4559	0.46	-1.8
4,756,804	-		SO4559	0.49	-0.7
4,756,811	+		SO4559	0.49	-1.5
4,756,811	+		SO4559	0.49	-1.3
4,756,865	-		SO4559	0.53	-1.7
4,756,871	-		SO4559	0.53	-0.8
4,756,911	+		SO4559	0.56	-0.5
4,756,911	+		SO4559	0.56	-1.7
4,756,973	+		SO4559	0.60	-1.7
4,757,051	-		SO4559	0.66	-2.2
4,757,118	-		SO4559	0.70	-0.2
4,757,164	-		SO4559	0.73	-1.0
4,757,272	-		SO4559	0.81	-1.8
4,757,289	-		SO4559	0.82	-0.8
4,757,294	+		SO4559	0.82	-1.2
4,757,378	+		SO4559	0.88	-1.0
4,757,378	+		SO4559	0.88	-1.0
4,757,378	+		SO4559	0.88	-1.2
4,757,378	+		SO4559	0.88	-1.3
4,757,378	+		SO4559	0.88	-0.6
4,757,378	+		SO4559	0.88	-0.8
4,757,386	-		SO4559	0.89	-1.6
4,757,386	-		SO4559	0.89	-1.9
4,757,386	-		SO4559	0.89	-1.5
4,757,386	-		SO4559	0.89	-1.3
4,757,386	-		SO4559	0.89	-0.9
4,757,386	-		SO4559	0.89	-1.8
4,757,386	-		SO4559	0.89	-1.5
4,757,420	-				-0.9
4,757,420	-				-1.7
4,757,540	-				-0.3
4,757,547	+				-2.0
4,757,569	+				-1.4
4,757,577	-				+0.1
4,757,577	-				-0.5
4,757,600	+				-2.4
4,757,679	+		SO4560	0.12	-0.3
4,757,679	+		SO4560	0.12	-0.5
4,757,687	-		SO4560	0.13	-0.7
4,757,714	-		SO4560	0.16	-1.0
4,757,803	-		SO4560	0.27	-0.4
4,757,804	-		SO4560	0.28	+0.4
4,757,916	+		SO4560	0.42	-1.8
4,757,924	-		SO4560	0.43	-1.0
4,757,924	-		SO4560	0.43	-1.5
4,757,934	+		SO4560	0.44	-1.9
4,757,967	-		SO4560	0.48	-1.5
4,757,967	-		SO4560	0.48	-0.7
4,757,972	-		SO4560	0.49	-0.3
4,758,039	-		SO4560	0.57	-0.9
4,758,175	-		SO4560	0.74	-1.6
4,758,175	-		SO4560	0.74	-1.1
4,758,178	+		SO4560	0.75	-1.2
4,758,328	-				-0.5
4,758,374	+				-0.2
4,758,387	-				-1.1
4,758,444	+				+1.2
4,758,456	-				-0.6
4,758,466	+				-0.2
4,758,473	-				+0.5
4,758,473	-				-0.5
4,758,473	-				-0.3
4,758,473	-				-0.4
4,758,481	-				+0.1
4,758,509	+				-0.3