Strain Fitness in Shewanella oneidensis MR-1 around SO4190

Experiment: Paraquat dichloride 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.125 mg/ml
4,357,984	+				+0.7
4,357,984	-				+0.2
4,357,984	-				-0.2
4,358,002	+				+0.3
4,358,022	+				+0.1
4,358,024	-				+0.2
4,358,050	+				-0.3
4,358,148	+		SO4188	0.35	+0.2
4,358,158	+		SO4188	0.44	-0.0
4,358,182	-		SO4188	0.66	+0.5
4,358,183	-		SO4188	0.67	+0.4
4,358,247	-				+0.2
4,358,262	-				+0.0
4,358,307	+				+0.9
4,358,315	-				-0.3
4,358,315	-				+0.3
4,358,391	-		SO4189	0.17	-0.8
4,358,504	-		SO4189	0.42	-0.1
4,358,504	-		SO4189	0.42	-0.8
4,358,535	+		SO4189	0.48	+0.6
4,358,537	-		SO4189	0.49	-0.9
4,358,551	-		SO4189	0.52	+0.9
4,358,575	+		SO4189	0.57	-0.1
4,358,600	-		SO4189	0.63	+0.0
4,358,664	+		SO4189	0.76	+1.6
4,358,672	-		SO4189	0.78	-0.2
4,358,705	+		SO4189	0.85	+0.9
4,358,726	+				+0.1
4,358,742	+				-0.4
4,358,790	+				-0.3
4,358,802	+				-0.1
4,358,822	-				-0.2
4,358,846	-				-0.2
4,359,849	+				-1.7
4,359,856	-				+0.2
4,359,894	+				+0.2
4,359,902	-				+0.6
4,359,902	-				-0.2
4,359,931	-				-0.5
4,359,980	+				-0.9
4,360,026	+				+0.3
4,360,141	-		SO4191	0.15	-0.0
4,360,180	+		SO4191	0.21	-0.9
4,360,225	+		SO4191	0.29	+0.1
4,360,486	+		SO4191	0.74	-0.0
4,360,545	+		SO4191	0.84	+0.1
4,360,696	+				-0.2
4,360,712	+				-0.1
4,360,712	+				-1.2
4,360,786	-				+0.1
4,360,820	-				-0.4
4,360,833	+				-0.3
4,360,833	+				+0.5