Strain Fitness in Shewanella oneidensis MR-1 around SO4089

Experiment: Paraquat dichloride 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.125 mg/ml
4,242,350	-		SO4088	0.32	-2.3
4,242,350	-		SO4088	0.32	-0.9
4,242,350	-		SO4088	0.32	-0.8
4,242,350	-		SO4088	0.32	-1.4
4,242,350	-		SO4088	0.32	-1.0
4,242,350	-		SO4088	0.32	-0.4
4,242,366	+		SO4088	0.33	+0.5
4,242,448	+		SO4088	0.39	-1.2
4,242,458	-		SO4088	0.40	-0.2
4,242,458	-		SO4088	0.40	-0.9
4,242,506	+		SO4088	0.44	-0.1
4,242,514	-		SO4088	0.44	-0.2
4,242,514	-		SO4088	0.44	-0.0
4,242,560	+		SO4088	0.48	-0.7
4,242,627	+		SO4088	0.53	-0.1
4,242,648	-		SO4088	0.55	-1.0
4,242,863	+		SO4088	0.71	-0.8
4,242,863	+		SO4088	0.71	-0.8
4,242,864	+		SO4088	0.71	-0.6
4,242,871	-		SO4088	0.72	+0.2
4,242,871	-		SO4088	0.72	-0.6
4,242,871	-		SO4088	0.72	-0.9
4,242,876	-		SO4088	0.72	-0.6
4,242,929	+		SO4088	0.76	-0.6
4,242,990	-		SO4088	0.81	-0.4
4,243,052	+		SO4088	0.85	-1.9
4,243,052	-		SO4088	0.85	-0.3
4,243,128	+				-2.9
4,243,263	-				-1.3
4,243,319	+				-1.2
4,243,577	-		SO4089	0.34	-1.4
4,243,577	-		SO4089	0.34	-0.7
4,243,625	+		SO4089	0.39	-0.9
4,243,715	-		SO4089	0.48	-0.5
4,243,742	+		SO4089	0.51	-1.4
4,243,833	+		SO4089	0.60	+0.4
4,243,942	+		SO4089	0.71	-0.6
4,243,971	-		SO4089	0.74	-1.3
4,243,971	-		SO4089	0.74	-0.4
4,243,971	-		SO4089	0.74	-1.6
4,243,991	+		SO4089	0.76	-0.7
4,244,086	-		SO4089	0.86	-0.6
4,244,140	-				-0.8
4,244,140	-				-0.5
4,244,140	-				+0.1
4,244,140	-				-1.5
4,244,163	+				-1.7
4,244,174	+				-0.9
4,244,255	-				+0.2
4,244,308	+				-1.1
4,244,348	-				-2.4
4,244,369	-		SO4090	0.11	-1.0
4,244,456	-		SO4090	0.17	-0.8
4,244,466	-		SO4090	0.18	-0.7
4,244,467	-		SO4090	0.18	+0.1
4,244,494	-		SO4090	0.20	-0.6
4,244,590	+		SO4090	0.27	-0.8
4,244,652	+		SO4090	0.31	-0.5
4,244,764	-		SO4090	0.39	-0.7
4,244,785	-		SO4090	0.40	-1.2
4,244,965	+		SO4090	0.53	-0.6
4,245,091	-		SO4090	0.62	-0.6
4,245,091	-		SO4090	0.62	-1.5
4,245,107	+		SO4090	0.63	-1.0
4,245,107	+		SO4090	0.63	-0.4
4,245,115	-		SO4090	0.64	-0.5
4,245,214	+		SO4090	0.70	-0.4