Strain Fitness in Shewanella oneidensis MR-1 around SO3855

Experiment: Paraquat dichloride 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.125 mg/ml
3,999,803	-		SO3854	0.30	-0.6
3,999,803	-		SO3854	0.30	+0.9
3,999,863	+		SO3854	0.37	+0.1
3,999,865	+		SO3854	0.37	+0.2
3,999,865	+		SO3854	0.37	-0.2
3,999,871	-		SO3854	0.38	-0.8
3,999,871	-		SO3854	0.38	+0.2
3,999,885	-		SO3854	0.39	+0.3
3,999,921	-		SO3854	0.43	+0.5
4,000,234	-		SO3854	0.77	-0.7
4,000,326	+		SO3854	0.87	+0.1
4,000,411	+				-0.2
4,000,411	+				+0.3
4,000,411	+				+0.3
4,000,420	-				-0.6
4,000,430	-				+0.0
4,000,460	+				+0.1
4,000,551	+				-0.4
4,000,730	+				-0.2
4,000,749	-				-0.3
4,000,776	-				-1.1
4,000,781	-				-0.0
4,000,908	+				-0.8
4,000,924	-				-0.9
4,000,946	+				-0.3
4,000,965	-	sfcA	SO3855	0.10	-0.3
4,001,022	-	sfcA	SO3855	0.14	-1.6
4,001,045	-	sfcA	SO3855	0.15	-0.2
4,001,100	-	sfcA	SO3855	0.18	-1.0
4,001,138	+	sfcA	SO3855	0.21	-1.7
4,001,153	+	sfcA	SO3855	0.22	+0.1
4,001,325	+	sfcA	SO3855	0.32	-1.0
4,001,330	+	sfcA	SO3855	0.32	-0.0
4,001,333	-	sfcA	SO3855	0.32	-1.2
4,001,359	+	sfcA	SO3855	0.34	-0.7
4,001,359	+	sfcA	SO3855	0.34	-0.5
4,001,619	-	sfcA	SO3855	0.49	-1.3
4,001,647	+	sfcA	SO3855	0.51	-0.5
4,001,655	-	sfcA	SO3855	0.51	-1.1
4,001,685	-	sfcA	SO3855	0.53	-1.1
4,001,705	-	sfcA	SO3855	0.54	-0.7
4,001,812	+	sfcA	SO3855	0.61	-0.7
4,001,939	-	sfcA	SO3855	0.68	-1.6
4,001,939	-	sfcA	SO3855	0.68	+0.2
4,001,953	+	sfcA	SO3855	0.69	-0.3
4,001,953	+	sfcA	SO3855	0.69	-0.6
4,001,961	-	sfcA	SO3855	0.69	+1.0
4,001,996	-	sfcA	SO3855	0.72	-0.5
4,002,090	+	sfcA	SO3855	0.77	-0.4
4,002,158	+	sfcA	SO3855	0.81	-0.9
4,002,176	-	sfcA	SO3855	0.82	-2.1
4,002,197	-	sfcA	SO3855	0.83	-0.5
4,002,243	+	sfcA	SO3855	0.86	-0.8
4,002,294	+	sfcA	SO3855	0.89	-0.7
4,002,378	+				-2.1
4,002,378	+				-1.0
4,002,574	+				-0.8
4,002,585	-				-0.2
4,002,635	-		SO3856	0.20	+0.5
4,002,635	-		SO3856	0.20	-0.2
4,002,635	-		SO3856	0.20	-0.2
4,002,770	+		SO3856	0.51	-0.3
4,002,778	-		SO3856	0.52	+0.2
4,002,808	-		SO3856	0.59	+0.3
4,002,813	-		SO3856	0.60	-0.1
4,002,813	-		SO3856	0.60	+0.4
4,002,863	-		SO3856	0.72	+1.0
4,002,961	-				-0.5
4,003,099	+		SO3857	0.17	-0.1
4,003,167	+		SO3857	0.30	-0.3
4,003,247	+		SO3857	0.45	-0.2
4,003,256	+		SO3857	0.47	-0.2
4,003,276	-		SO3857	0.51	+0.4
4,003,325	+		SO3857	0.60	+0.2
4,003,333	-		SO3857	0.62	-0.2
4,003,333	-		SO3857	0.62	+0.1
4,003,334	-		SO3857	0.62	-0.2
4,003,350	+		SO3857	0.65	-0.1
4,003,358	+		SO3857	0.66	+0.5
4,003,358	-		SO3857	0.66	-0.0
4,003,368	+		SO3857	0.68	+0.5
4,003,391	-		SO3857	0.73	+0.1
4,003,440	-		SO3857	0.82	-0.2