Strain Fitness in Shewanella oneidensis MR-1 around SO3740

Experiment: Paraquat dichloride 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.125 mg/ml
3,884,257	-	cysJ	SO3738	0.83	-0.4
3,884,257	-	cysJ	SO3738	0.83	+0.4
3,884,285	-	cysJ	SO3738	0.85	+1.1
3,884,373	+	cysJ	SO3738	0.90	-0.5
3,884,498	-				+0.1
3,884,577	+				-0.5
3,884,691	+				+0.4
3,884,729	+				+0.2
3,884,795	-				-0.1
3,884,900	+				+0.1
3,884,900	+				+0.3
3,884,900	+				+0.4
3,884,900	+				+0.3
3,884,900	+				-0.3
3,884,900	+				-0.1
3,884,908	-				+0.2
3,884,908	-				-1.0
3,884,908	-				+0.1
3,884,908	-				-0.4
3,884,908	-				-0.8
3,884,921	+				-0.4
3,884,966	-				+0.2
3,885,038	+				-0.1
3,885,046	-				+0.4
3,885,062	+				+0.2
3,885,070	-				-0.6
3,885,141	+	pntA	SO3740	0.11	-0.0
3,885,153	+	pntA	SO3740	0.12	+0.7
3,885,229	+	pntA	SO3740	0.17	-0.1
3,885,239	+	pntA	SO3740	0.17	+0.3
3,885,327	-	pntA	SO3740	0.23	+0.8
3,885,344	+	pntA	SO3740	0.24	+0.0
3,885,677	-	pntA	SO3740	0.46	+0.8
3,885,705	+	pntA	SO3740	0.48	+0.0
3,885,705	+	pntA	SO3740	0.48	-0.5
3,885,774	-	pntA	SO3740	0.52	-0.1
3,885,986	-	pntA	SO3740	0.66	+0.1
3,886,035	-	pntA	SO3740	0.69	+0.1
3,886,060	+	pntA	SO3740	0.71	+0.4
3,886,318	+	pntA	SO3740	0.88	-0.8
3,886,326	-	pntA	SO3740	0.89	+0.3
3,886,326	-	pntA	SO3740	0.89	+0.4
3,886,387	+				+1.5
3,886,405	+				-0.5
3,886,407	+				-0.7
3,886,436	+				+0.2
3,886,460	+				+1.2
3,886,494	+				-0.0
3,886,526	+				-0.3
3,886,544	-				+0.3
3,886,781	+	pntB	SO3741	0.19	-0.7
3,886,786	-	pntB	SO3741	0.19	+0.4
3,886,864	+	pntB	SO3741	0.25	+0.7
3,886,906	-	pntB	SO3741	0.28	+0.1
3,887,027	+	pntB	SO3741	0.37	+0.1
3,887,053	+	pntB	SO3741	0.38	-0.0
3,887,116	+	pntB	SO3741	0.43	+0.4
3,887,297	+	pntB	SO3741	0.56	+1.1
3,887,309	+	pntB	SO3741	0.57	+0.2