Experiment: Paraquat dichloride 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ispG and SO3313 are separated by 42 nucleotides SO3313 and SO3314 overlap by 4 nucleotides SO3314 and SO3315 are separated by 32 nucleotides
SO3312: ispG - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (NCBI ptt file), at 3,463,790 to 3,464,905
ispG
SO3313: SO3313 - conserved hypothetical protein (NCBI ptt file), at 3,464,948 to 3,466,072
SO3313
SO3314: SO3314 - fimbrial biogenesis and twitching motility protein, putative (NCBI ptt file), at 3,466,069 to 3,466,857
SO3314
SO3315: SO3315 - conserved hypothetical protein TIGR00048 (NCBI ptt file), at 3,466,890 to 3,468,011
SO3315
Position (kb)
3464
3465
3466
3467 Strain fitness (log2 ratio)
-2
-1
0
1 at 3464.954 kb on - strand at 3465.134 kb on - strand, within SO3313 at 3465.378 kb on - strand, within SO3313 at 3465.411 kb on - strand, within SO3313 at 3465.859 kb on - strand, within SO3313 at 3465.961 kb on - strand at 3465.961 kb on - strand at 3466.088 kb on - strand at 3466.098 kb on - strand at 3466.108 kb on - strand at 3466.174 kb on - strand, within SO3314 at 3466.291 kb on - strand, within SO3314 at 3466.315 kb on + strand, within SO3314 at 3466.335 kb on - strand, within SO3314 at 3466.461 kb on - strand, within SO3314 at 3466.619 kb on + strand, within SO3314 at 3466.679 kb on - strand, within SO3314 at 3466.741 kb on - strand, within SO3314 at 3466.798 kb on - strand at 3466.808 kb on + strand at 3466.816 kb on - strand at 3466.816 kb on - strand at 3466.816 kb on - strand at 3466.874 kb on - strand at 3466.874 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.125 mg/ml remove 3,464,954 - -0.8 3,465,134 - SO3313 0.17 -0.3 3,465,378 - SO3313 0.38 -0.2 3,465,411 - SO3313 0.41 -0.9 3,465,859 - SO3313 0.81 -2.6 3,465,961 - -0.1 3,465,961 - -1.4 3,466,088 - -0.5 3,466,098 - -0.3 3,466,108 - -0.1 3,466,174 - SO3314 0.13 -0.7 3,466,291 - SO3314 0.28 +0.4 3,466,315 + SO3314 0.31 -2.4 3,466,335 - SO3314 0.34 -0.3 3,466,461 - SO3314 0.50 -0.7 3,466,619 + SO3314 0.70 -2.1 3,466,679 - SO3314 0.77 +0.4 3,466,741 - SO3314 0.85 -0.2 3,466,798 - -1.0 3,466,808 + -0.4 3,466,816 - -0.1 3,466,816 - +0.5 3,466,816 - -0.5 3,466,874 - -0.7 3,466,874 - -0.1
Or see this region's nucleotide sequence