Strain Fitness in Shewanella oneidensis MR-1 around SO2510

Experiment: Paraquat dichloride 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSO2508 and SO2509 are separated by 0 nucleotidesSO2509 and SO2510 are separated by 3 nucleotidesSO2510 and SO2511 are separated by 65 nucleotides SO2508: SO2508 - RnfAE/NqrDE family protein (NCBI ptt file), at 2,635,623 to 2,636,201 SO2508 SO2509: SO2509 - iron-sulfur cluster-binding protein (NCBI ptt file), at 2,636,202 to 2,636,783 SO2509 SO2510: SO2510 - iron-sulfur cluster-binding protein (NCBI ptt file), at 2,636,787 to 2,639,159 SO2510 SO2511: SO2511 - membrane protein, putative (NCBI ptt file), at 2,639,225 to 2,640,274 SO2511 Position (kb) 2636 2637 2638 2639 2640Strain fitness (log2 ratio) -2 -1 0 1at 2638.718 kb on + strand, within SO2510at 2639.032 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.125 mg/ml
remove
2,638,718 + SO2510 0.81 -2.1
2,639,032 + -1.1

Or see this region's nucleotide sequence