Experiment: Paraquat dichloride 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO2280 and SO2281 are separated by 473 nucleotides SO2281 and SO2282 are separated by 157 nucleotides
SO2280: SO2280 - bicyclomycin resistance protein (NCBI ptt file), at 2,392,027 to 2,393,250
SO2280
SO2281: SO2281 - alkaline phosphatase (NCBI ptt file), at 2,393,724 to 2,395,598
SO2281
SO2282: SO2282 - transcriptional regulator, GntR family (NCBI ptt file), at 2,395,756 to 2,397,114
SO2282
Position (kb)
2393
2394
2395
2396 Strain fitness (log2 ratio)
-1
0
1 at 2392.971 kb on - strand, within SO2280 at 2392.995 kb on + strand, within SO2280 at 2393.007 kb on + strand, within SO2280 at 2393.193 kb on + strand at 2393.414 kb on + strand at 2393.427 kb on - strand at 2393.442 kb on + strand at 2393.450 kb on - strand at 2393.469 kb on - strand at 2393.647 kb on - strand at 2393.783 kb on + strand at 2393.853 kb on + strand at 2393.873 kb on + strand at 2393.881 kb on - strand at 2393.995 kb on - strand, within SO2281 at 2394.024 kb on - strand, within SO2281 at 2394.134 kb on + strand, within SO2281 at 2394.174 kb on + strand, within SO2281 at 2394.576 kb on + strand, within SO2281 at 2394.624 kb on + strand, within SO2281 at 2394.872 kb on + strand, within SO2281 at 2395.053 kb on - strand, within SO2281 at 2395.289 kb on + strand, within SO2281 at 2395.336 kb on + strand, within SO2281 at 2395.344 kb on - strand, within SO2281 at 2395.351 kb on + strand, within SO2281 at 2395.351 kb on + strand, within SO2281 at 2395.369 kb on - strand, within SO2281 at 2395.457 kb on - strand at 2395.564 kb on - strand at 2395.583 kb on + strand at 2395.583 kb on + strand at 2395.670 kb on - strand at 2395.745 kb on + strand at 2395.787 kb on - strand at 2395.896 kb on - strand, within SO2282 at 2395.942 kb on - strand, within SO2282 at 2395.946 kb on + strand, within SO2282 at 2396.022 kb on + strand, within SO2282 at 2396.030 kb on - strand, within SO2282 at 2396.106 kb on + strand, within SO2282 at 2396.109 kb on - strand, within SO2282 at 2396.165 kb on + strand, within SO2282 at 2396.311 kb on + strand, within SO2282 at 2396.427 kb on + strand, within SO2282 at 2396.429 kb on - strand, within SO2282 at 2396.495 kb on - strand, within SO2282
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.125 mg/ml remove 2,392,971 - SO2280 0.77 -0.3 2,392,995 + SO2280 0.79 +0.4 2,393,007 + SO2280 0.80 +0.1 2,393,193 + +0.8 2,393,414 + -0.0 2,393,427 - -1.0 2,393,442 + +0.9 2,393,450 - +0.4 2,393,469 - -0.2 2,393,647 - -0.4 2,393,783 + -0.3 2,393,853 + +0.6 2,393,873 + -0.0 2,393,881 - +0.7 2,393,995 - SO2281 0.14 -0.1 2,394,024 - SO2281 0.16 -0.2 2,394,134 + SO2281 0.22 +0.3 2,394,174 + SO2281 0.24 -0.3 2,394,576 + SO2281 0.45 +0.0 2,394,624 + SO2281 0.48 +0.5 2,394,872 + SO2281 0.61 -0.2 2,395,053 - SO2281 0.71 +0.0 2,395,289 + SO2281 0.83 +0.3 2,395,336 + SO2281 0.86 -0.3 2,395,344 - SO2281 0.86 +0.8 2,395,351 + SO2281 0.87 +0.2 2,395,351 + SO2281 0.87 +0.6 2,395,369 - SO2281 0.88 +0.1 2,395,457 - -0.1 2,395,564 - -0.0 2,395,583 + -0.5 2,395,583 + -0.4 2,395,670 - -0.3 2,395,745 + +0.3 2,395,787 - +0.1 2,395,896 - SO2282 0.10 +0.1 2,395,942 - SO2282 0.14 +0.4 2,395,946 + SO2282 0.14 +0.3 2,396,022 + SO2282 0.20 -0.2 2,396,030 - SO2282 0.20 -0.2 2,396,106 + SO2282 0.26 -0.7 2,396,109 - SO2282 0.26 +0.0 2,396,165 + SO2282 0.30 +0.0 2,396,311 + SO2282 0.41 +0.7 2,396,427 + SO2282 0.49 +0.4 2,396,429 - SO2282 0.50 +0.0 2,396,495 - SO2282 0.54 -0.8
Or see this region's nucleotide sequence