Strain Fitness in Shewanella oneidensis MR-1 around SO2281

Experiment: Paraquat dichloride 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2280 and SO2281 are separated by 473 nucleotidesSO2281 and SO2282 are separated by 157 nucleotides SO2280: SO2280 - bicyclomycin resistance protein (NCBI ptt file), at 2,392,027 to 2,393,250 SO2280 SO2281: SO2281 - alkaline phosphatase (NCBI ptt file), at 2,393,724 to 2,395,598 SO2281 SO2282: SO2282 - transcriptional regulator, GntR family (NCBI ptt file), at 2,395,756 to 2,397,114 SO2282 Position (kb) 2393 2394 2395 2396Strain fitness (log2 ratio) -1 0 1at 2392.971 kb on - strand, within SO2280at 2392.995 kb on + strand, within SO2280at 2393.007 kb on + strand, within SO2280at 2393.193 kb on + strandat 2393.414 kb on + strandat 2393.427 kb on - strandat 2393.442 kb on + strandat 2393.450 kb on - strandat 2393.469 kb on - strandat 2393.647 kb on - strandat 2393.783 kb on + strandat 2393.853 kb on + strandat 2393.873 kb on + strandat 2393.881 kb on - strandat 2393.995 kb on - strand, within SO2281at 2394.024 kb on - strand, within SO2281at 2394.134 kb on + strand, within SO2281at 2394.174 kb on + strand, within SO2281at 2394.576 kb on + strand, within SO2281at 2394.624 kb on + strand, within SO2281at 2394.872 kb on + strand, within SO2281at 2395.053 kb on - strand, within SO2281at 2395.289 kb on + strand, within SO2281at 2395.336 kb on + strand, within SO2281at 2395.344 kb on - strand, within SO2281at 2395.351 kb on + strand, within SO2281at 2395.351 kb on + strand, within SO2281at 2395.369 kb on - strand, within SO2281at 2395.457 kb on - strandat 2395.564 kb on - strandat 2395.583 kb on + strandat 2395.583 kb on + strandat 2395.670 kb on - strandat 2395.745 kb on + strandat 2395.787 kb on - strandat 2395.896 kb on - strand, within SO2282at 2395.942 kb on - strand, within SO2282at 2395.946 kb on + strand, within SO2282at 2396.022 kb on + strand, within SO2282at 2396.030 kb on - strand, within SO2282at 2396.106 kb on + strand, within SO2282at 2396.109 kb on - strand, within SO2282at 2396.165 kb on + strand, within SO2282at 2396.311 kb on + strand, within SO2282at 2396.427 kb on + strand, within SO2282at 2396.429 kb on - strand, within SO2282at 2396.495 kb on - strand, within SO2282

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.125 mg/ml
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2,392,971 - SO2280 0.77 -0.3
2,392,995 + SO2280 0.79 +0.4
2,393,007 + SO2280 0.80 +0.1
2,393,193 + +0.8
2,393,414 + -0.0
2,393,427 - -1.0
2,393,442 + +0.9
2,393,450 - +0.4
2,393,469 - -0.2
2,393,647 - -0.4
2,393,783 + -0.3
2,393,853 + +0.6
2,393,873 + -0.0
2,393,881 - +0.7
2,393,995 - SO2281 0.14 -0.1
2,394,024 - SO2281 0.16 -0.2
2,394,134 + SO2281 0.22 +0.3
2,394,174 + SO2281 0.24 -0.3
2,394,576 + SO2281 0.45 +0.0
2,394,624 + SO2281 0.48 +0.5
2,394,872 + SO2281 0.61 -0.2
2,395,053 - SO2281 0.71 +0.0
2,395,289 + SO2281 0.83 +0.3
2,395,336 + SO2281 0.86 -0.3
2,395,344 - SO2281 0.86 +0.8
2,395,351 + SO2281 0.87 +0.2
2,395,351 + SO2281 0.87 +0.6
2,395,369 - SO2281 0.88 +0.1
2,395,457 - -0.1
2,395,564 - -0.0
2,395,583 + -0.5
2,395,583 + -0.4
2,395,670 - -0.3
2,395,745 + +0.3
2,395,787 - +0.1
2,395,896 - SO2282 0.10 +0.1
2,395,942 - SO2282 0.14 +0.4
2,395,946 + SO2282 0.14 +0.3
2,396,022 + SO2282 0.20 -0.2
2,396,030 - SO2282 0.20 -0.2
2,396,106 + SO2282 0.26 -0.7
2,396,109 - SO2282 0.26 +0.0
2,396,165 + SO2282 0.30 +0.0
2,396,311 + SO2282 0.41 +0.7
2,396,427 + SO2282 0.49 +0.4
2,396,429 - SO2282 0.50 +0.0
2,396,495 - SO2282 0.54 -0.8

Or see this region's nucleotide sequence