Strain Fitness in Shewanella oneidensis MR-1 around SO1805

Experiment: Paraquat dichloride 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.125 mg/ml
1,894,134	+	sapB	SO1804	0.29	-0.7
1,894,137	-	sapB	SO1804	0.29	-2.7
1,894,212	-	sapB	SO1804	0.37	-0.7
1,894,710	+	sapB	SO1804	0.85	-1.7
1,894,747	-	sapB	SO1804	0.89	-1.0
1,894,753	+	sapB	SO1804	0.89	-1.1
1,894,761	-				-2.6
1,894,761	-				-1.8
1,894,778	-				-3.3
1,894,984	-				-0.7
1,894,991	+				-2.3
1,895,567	-	sapA	SO1805	0.45	-2.6
1,896,031	-	sapA	SO1805	0.74	-0.5
1,896,197	-	sapA	SO1805	0.84	-0.9
1,896,222	-	sapA	SO1805	0.86	-1.4
1,896,543	+				-1.4
1,896,603	+				+0.0
1,896,611	-				+0.3
1,896,740	+	pspF	SO1806	0.17	+0.1
1,896,748	+	pspF	SO1806	0.17	-0.2
1,896,748	-	pspF	SO1806	0.17	+0.0
1,896,765	+	pspF	SO1806	0.19	-0.3
1,896,817	+	pspF	SO1806	0.24	+0.1
1,896,903	+	pspF	SO1806	0.32	-0.1
1,896,908	+	pspF	SO1806	0.32	-0.7
1,896,967	+	pspF	SO1806	0.37	+0.9
1,896,989	-	pspF	SO1806	0.39	-1.0
1,897,037	+	pspF	SO1806	0.44	-0.1
1,897,052	+	pspF	SO1806	0.45	+0.7
1,897,060	-	pspF	SO1806	0.46	+1.0
1,897,060	-	pspF	SO1806	0.46	-0.4
1,897,081	+	pspF	SO1806	0.48	+0.0
1,897,165	-	pspF	SO1806	0.55	-1.4
1,897,353	+	pspF	SO1806	0.73	+1.4
1,897,371	-	pspF	SO1806	0.74	+0.4