Strain Fitness in Shewanella oneidensis MR-1 around SO1725

Experiment: Paraquat dichloride 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO1724 and pstB-1 are separated by 57 nucleotidespstB-1 and phoU are separated by 131 nucleotides SO1724: SO1724 - phosphate ABC transporter, permease protein, putative (NCBI ptt file), at 1,810,696 to 1,812,354 SO1724 SO1725: pstB-1 - phosphate ABC transporter, ATP-binding protein (NCBI ptt file), at 1,812,412 to 1,813,206 pstB-1 SO1726: phoU - phosphate transport system regulatory protein PhoU (NCBI ptt file), at 1,813,338 to 1,814,048 phoU Position (kb) 1812 1813 1814Strain fitness (log2 ratio) -1 0 1at 1811.881 kb on + strand, within SO1724at 1811.977 kb on + strand, within SO1724at 1811.994 kb on + strand, within SO1724at 1811.994 kb on + strand, within SO1724at 1812.039 kb on + strand, within SO1724at 1812.286 kb on + strandat 1812.291 kb on + strandat 1812.302 kb on + strandat 1812.302 kb on + strandat 1814.066 kb on + strandat 1814.088 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.125 mg/ml
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1,811,881 + SO1724 0.71 -0.8
1,811,977 + SO1724 0.77 -1.2
1,811,994 + SO1724 0.78 -0.3
1,811,994 + SO1724 0.78 -0.1
1,812,039 + SO1724 0.81 -0.3
1,812,286 + -1.3
1,812,291 + -1.6
1,812,302 + -0.4
1,812,302 + -0.0
1,814,066 + -0.2
1,814,088 - +0.2

Or see this region's nucleotide sequence