Strain Fitness in Shewanella oneidensis MR-1 around SO1664

Experiment: Paraquat dichloride 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO1662 and napF are separated by 122 nucleotidesnapF and galE are separated by 76 nucleotidesgalE and galU overlap by 1 nucleotides SO1662: SO1662 - hypothetical Ccm2-related protein (NCBI ptt file), at 1,750,121 to 1,750,528 SO1662 SO1663: napF - ferredoxin-type protein NapF (NCBI ptt file), at 1,750,651 to 1,751,136 napF SO1664: galE - UDP-glucose 4-epimerase (NCBI ptt file), at 1,751,213 to 1,752,226 galE SO1665: galU - UTP-glucose-1-phosphate uridylyltransferase (NCBI ptt file), at 1,752,226 to 1,753,134 galU Position (kb) 1751 1752 1753Strain fitness (log2 ratio) -3 -2 -1 0 1at 1750.318 kb on - strand, within SO1662at 1750.397 kb on - strand, within SO1662at 1750.397 kb on - strand, within SO1662at 1750.397 kb on - strand, within SO1662at 1750.474 kb on + strand, within SO1662at 1750.496 kb on + strandat 1750.524 kb on + strandat 1750.625 kb on + strandat 1750.785 kb on + strand, within napFat 1750.837 kb on - strand, within napFat 1751.059 kb on + strand, within napFat 1751.280 kb on - strandat 1751.352 kb on + strand, within galEat 1751.364 kb on + strand, within galEat 1751.388 kb on + strand, within galEat 1751.388 kb on + strand, within galEat 1751.414 kb on - strand, within galEat 1751.440 kb on - strand, within galEat 1751.457 kb on - strand, within galEat 1751.493 kb on + strand, within galEat 1751.493 kb on + strand, within galEat 1751.501 kb on - strand, within galEat 1751.550 kb on - strand, within galEat 1751.663 kb on + strand, within galEat 1751.700 kb on - strand, within galEat 1751.700 kb on - strand, within galEat 1751.700 kb on - strand, within galEat 1751.908 kb on + strand, within galEat 1751.916 kb on - strand, within galEat 1751.916 kb on - strand, within galEat 1751.916 kb on - strand, within galEat 1752.101 kb on + strand, within galEat 1752.101 kb on + strand, within galEat 1752.109 kb on - strand, within galEat 1752.109 kb on - strand, within galEat 1752.316 kb on + strandat 1752.316 kb on + strandat 1752.707 kb on + strand, within galUat 1752.707 kb on + strand, within galUat 1752.715 kb on - strand, within galUat 1752.753 kb on - strand, within galUat 1752.793 kb on + strand, within galUat 1752.799 kb on + strand, within galUat 1752.799 kb on + strand, within galUat 1752.807 kb on - strandat 1752.829 kb on - strand, within galUat 1753.015 kb on + strand, within galUat 1753.141 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.125 mg/ml
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1,750,318 - SO1662 0.48 -0.2
1,750,397 - SO1662 0.68 +0.3
1,750,397 - SO1662 0.68 -0.3
1,750,397 - SO1662 0.68 +0.4
1,750,474 + SO1662 0.87 -0.5
1,750,496 + -0.5
1,750,524 + -0.3
1,750,625 + -1.6
1,750,785 + napF SO1663 0.28 +0.1
1,750,837 - napF SO1663 0.38 +0.9
1,751,059 + napF SO1663 0.84 +0.2
1,751,280 - +0.5
1,751,352 + galE SO1664 0.14 +0.1
1,751,364 + galE SO1664 0.15 -0.2
1,751,388 + galE SO1664 0.17 -0.2
1,751,388 + galE SO1664 0.17 +0.4
1,751,414 - galE SO1664 0.20 +0.5
1,751,440 - galE SO1664 0.22 -0.0
1,751,457 - galE SO1664 0.24 +0.5
1,751,493 + galE SO1664 0.28 +0.5
1,751,493 + galE SO1664 0.28 +1.2
1,751,501 - galE SO1664 0.28 +0.2
1,751,550 - galE SO1664 0.33 +0.4
1,751,663 + galE SO1664 0.44 +0.1
1,751,700 - galE SO1664 0.48 +0.4
1,751,700 - galE SO1664 0.48 -1.1
1,751,700 - galE SO1664 0.48 -0.1
1,751,908 + galE SO1664 0.69 +0.3
1,751,916 - galE SO1664 0.69 +0.5
1,751,916 - galE SO1664 0.69 +0.4
1,751,916 - galE SO1664 0.69 +0.2
1,752,101 + galE SO1664 0.88 +0.3
1,752,101 + galE SO1664 0.88 -0.2
1,752,109 - galE SO1664 0.88 +0.1
1,752,109 - galE SO1664 0.88 +0.6
1,752,316 + -0.8
1,752,316 + -1.1
1,752,707 + galU SO1665 0.53 -2.6
1,752,707 + galU SO1665 0.53 -2.1
1,752,715 - galU SO1665 0.54 -2.1
1,752,753 - galU SO1665 0.58 -2.1
1,752,793 + galU SO1665 0.62 -2.9
1,752,799 + galU SO1665 0.63 -0.6
1,752,799 + galU SO1665 0.63 -1.7
1,752,807 - +0.2
1,752,829 - galU SO1665 0.66 -3.4
1,753,015 + galU SO1665 0.87 -2.1
1,753,141 + -1.2

Or see this region's nucleotide sequence