Strain Fitness in Shewanella oneidensis MR-1 around SO1558
Experiment: Paraquat dichloride 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.125 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,633,493 | - | SO1557 | 0.17 | +1.0 | |
1,633,563 | - | SO1557 | 0.24 | +0.4 | |
1,633,647 | - | SO1557 | 0.33 | +0.4 | |
1,633,680 | + | SO1557 | 0.36 | -1.0 | |
1,633,688 | - | SO1557 | 0.37 | +0.2 | |
1,633,756 | + | SO1557 | 0.44 | -0.3 | |
1,633,772 | + | SO1557 | 0.45 | +0.8 | |
1,633,772 | + | SO1557 | 0.45 | +0.0 | |
1,633,772 | + | SO1557 | 0.45 | -0.3 | |
1,633,780 | - | SO1557 | 0.46 | +0.1 | |
1,633,875 | + | SO1557 | 0.56 | +0.2 | |
1,633,931 | + | SO1557 | 0.62 | +0.1 | |
1,633,931 | + | SO1557 | 0.62 | -0.3 | |
1,633,982 | - | SO1557 | 0.67 | -0.4 | |
1,633,988 | + | SO1557 | 0.68 | -0.1 | |
1,633,998 | + | SO1557 | 0.69 | +0.8 | |
1,634,019 | + | SO1557 | 0.71 | +0.0 | |
1,634,067 | - | SO1557 | 0.76 | -0.1 | |
1,634,067 | - | SO1557 | 0.76 | -0.0 | |
1,634,104 | + | SO1557 | 0.80 | +0.3 | |
1,634,154 | - | SO1557 | 0.85 | -0.8 | |
1,634,172 | - | SO1557 | 0.87 | +0.2 | |
1,634,185 | + | SO1557 | 0.88 | +0.3 | |
1,634,193 | - | SO1557 | 0.89 | +0.3 | |
1,634,237 | + | +0.9 | |||
1,634,292 | + | -0.2 | |||
1,634,300 | - | +0.3 | |||
1,634,300 | - | +0.0 | |||
1,634,495 | - | -0.6 | |||
1,634,568 | - | phoB | SO1558 | 0.16 | -0.3 |
1,634,613 | - | phoB | SO1558 | 0.22 | -0.2 |
1,634,613 | - | phoB | SO1558 | 0.22 | +0.2 |
1,634,615 | + | phoB | SO1558 | 0.22 | +0.6 |
1,634,615 | + | phoB | SO1558 | 0.22 | -0.0 |
1,634,615 | + | phoB | SO1558 | 0.22 | -1.3 |
1,634,623 | - | phoB | SO1558 | 0.23 | +0.8 |
1,634,623 | - | phoB | SO1558 | 0.23 | +0.1 |
1,634,623 | - | phoB | SO1558 | 0.23 | +0.3 |
1,634,623 | - | phoB | SO1558 | 0.23 | +0.4 |
1,634,648 | - | phoB | SO1558 | 0.27 | -0.2 |
1,634,756 | + | phoB | SO1558 | 0.42 | -0.1 |
1,634,763 | - | phoB | SO1558 | 0.43 | +0.4 |
1,634,764 | + | phoB | SO1558 | 0.43 | +0.5 |
1,634,814 | - | phoB | SO1558 | 0.50 | +0.4 |
1,634,846 | - | phoB | SO1558 | 0.54 | +0.2 |
1,634,925 | - | phoB | SO1558 | 0.65 | +0.4 |
1,635,227 | + | +1.2 | |||
1,635,237 | + | -0.3 | |||
1,635,449 | + | phoR | SO1559 | 0.15 | -0.6 |
1,635,449 | + | phoR | SO1559 | 0.15 | +0.4 |
1,635,449 | + | phoR | SO1559 | 0.15 | +0.2 |
1,635,563 | + | phoR | SO1559 | 0.24 | +0.9 |
1,635,563 | + | phoR | SO1559 | 0.24 | -0.8 |
1,635,569 | + | phoR | SO1559 | 0.24 | -0.9 |
1,635,571 | - | phoR | SO1559 | 0.24 | -0.1 |
1,635,571 | - | phoR | SO1559 | 0.24 | +0.1 |
1,635,592 | + | phoR | SO1559 | 0.26 | +0.4 |
1,635,592 | + | phoR | SO1559 | 0.26 | +0.6 |
1,635,595 | - | phoR | SO1559 | 0.26 | +0.4 |
1,635,605 | - | phoR | SO1559 | 0.27 | +0.4 |
1,635,605 | - | phoR | SO1559 | 0.27 | -0.8 |
1,635,619 | - | phoR | SO1559 | 0.28 | -1.1 |
1,635,643 | - | phoR | SO1559 | 0.30 | -0.8 |
1,635,674 | - | phoR | SO1559 | 0.32 | -0.1 |
1,635,810 | + | phoR | SO1559 | 0.43 | -0.5 |
1,635,846 | + | phoR | SO1559 | 0.46 | +0.4 |
1,636,021 | + | phoR | SO1559 | 0.59 | -0.5 |
1,636,021 | + | phoR | SO1559 | 0.59 | -0.4 |
1,636,021 | + | phoR | SO1559 | 0.59 | +0.5 |
1,636,021 | + | phoR | SO1559 | 0.59 | +0.2 |
1,636,029 | - | phoR | SO1559 | 0.60 | +0.1 |
1,636,105 | + | phoR | SO1559 | 0.66 | +0.6 |
1,636,138 | - | phoR | SO1559 | 0.68 | -0.2 |
1,636,138 | - | phoR | SO1559 | 0.68 | +0.1 |
1,636,155 | - | phoR | SO1559 | 0.69 | -1.6 |
Or see this region's nucleotide sequence