Strain Fitness in Shewanella oneidensis MR-1 around SO1178

Experiment: Paraquat dichloride 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcutE and corC are separated by 42 nucleotidescorC and SO1179 are separated by 39 nucleotidesSO1179 and SO1180 overlap by 11 nucleotides SO1177: cutE - apolipoprotein N-acyltransferase (NCBI ptt file), at 1,219,581 to 1,221,137 cutE SO1178: corC - magnesium and cobalt efflux protein CorC (NCBI ptt file), at 1,221,180 to 1,222,055 corC SO1179: SO1179 - conserved hypothetical protein TIGR00043 (NCBI ptt file), at 1,222,095 to 1,222,556 SO1179 SO1180: SO1180 - PhoH family protein (NCBI ptt file), at 1,222,546 to 1,223,613 SO1180 Position (kb) 1221 1222 1223Strain fitness (log2 ratio) -1 0 1at 1221.319 kb on - strand, within corCat 1222.885 kb on - strand, within SO1180at 1222.940 kb on - strand, within SO1180at 1223.005 kb on - strand, within SO1180at 1223.039 kb on - strand, within SO1180at 1223.050 kb on - strand, within SO1180

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.125 mg/ml
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1,221,319 - corC SO1178 0.16 -1.5
1,222,885 - SO1180 0.32 +0.5
1,222,940 - SO1180 0.37 +0.6
1,223,005 - SO1180 0.43 +0.2
1,223,039 - SO1180 0.46 -1.7
1,223,050 - SO1180 0.47 +0.2

Or see this region's nucleotide sequence