Strain Fitness in Shewanella oneidensis MR-1 around SO1052

Experiment: Paraquat dichloride 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.125 mg/ml
1,088,680	-		SO1051	0.56	-0.5
1,088,694	+		SO1051	0.57	-0.2
1,088,694	+		SO1051	0.57	-0.6
1,088,755	-		SO1051	0.60	-2.7
1,088,905	-		SO1051	0.69	+0.3
1,088,907	-		SO1051	0.69	+0.1
1,088,907	-		SO1051	0.69	-0.6
1,089,038	-		SO1051	0.76	-1.0
1,089,039	+		SO1051	0.76	-0.4
1,089,047	-		SO1051	0.77	-0.3
1,089,049	+		SO1051	0.77	-0.5
1,089,071	+		SO1051	0.78	-0.3
1,089,086	+		SO1051	0.79	-0.2
1,089,206	+		SO1051	0.86	-0.4
1,089,229	-		SO1051	0.87	-1.0
1,089,251	-		SO1051	0.88	-0.3
1,089,295	-				+0.5
1,089,314	-				-0.2
1,089,334	+				+0.1
1,089,334	+				+0.6
1,089,334	+				+0.4
1,089,334	+				+0.1
1,089,334	+				-0.3
1,089,337	-				+0.0
1,089,337	-				-0.8
1,089,337	-				+0.4
1,089,342	-				-0.9
1,089,349	+				-0.0
1,089,388	-				-1.0
1,089,440	+				-0.1
1,089,440	+				-0.3
1,089,499	-				-2.5
1,089,499	-				-0.3
1,089,560	+				-0.2
1,089,634	+				+0.2
1,089,685	-				+0.5
1,089,696	+				+0.2
1,089,696	+				+0.5
1,089,703	-				-0.1
1,089,757	+				+0.1
1,089,791	-				+0.1
1,089,867	-	pit	SO1052	0.15	-0.2
1,089,937	-	pit	SO1052	0.19	-0.3
1,090,027	-	pit	SO1052	0.25	+0.7
1,090,089	+	pit	SO1052	0.30	+0.5
1,090,089	+	pit	SO1052	0.30	-0.2
1,090,089	+	pit	SO1052	0.30	+0.0
1,090,089	+	pit	SO1052	0.30	+0.5
1,090,089	+	pit	SO1052	0.30	-0.6
1,090,089	+	pit	SO1052	0.30	-0.4
1,090,089	+	pit	SO1052	0.30	+0.4
1,090,089	+	pit	SO1052	0.30	-1.2
1,090,089	+	pit	SO1052	0.30	+0.5
1,090,097	-	pit	SO1052	0.30	-0.6
1,090,097	-	pit	SO1052	0.30	-0.7
1,090,099	+	pit	SO1052	0.30	+0.8
1,090,107	-	pit	SO1052	0.31	+0.3
1,090,151	-	pit	SO1052	0.34	+0.0
1,090,209	-	pit	SO1052	0.38	-0.1
1,090,305	+	pit	SO1052	0.44	-0.6
1,090,401	-	pit	SO1052	0.51	+0.1
1,090,597	+	pit	SO1052	0.64	+0.6
1,090,605	-	pit	SO1052	0.65	-0.9
1,090,612	+	pit	SO1052	0.65	+0.9
1,090,620	+	pit	SO1052	0.66	+0.5
1,090,620	+	pit	SO1052	0.66	+0.3
1,090,620	-	pit	SO1052	0.66	+0.3
1,090,628	-	pit	SO1052	0.66	+1.3
1,090,628	-	pit	SO1052	0.66	-0.7
1,090,709	+	pit	SO1052	0.72	-0.6
1,090,803	+	pit	SO1052	0.78	+0.1
1,090,811	-	pit	SO1052	0.79	-0.7
1,090,908	-	pit	SO1052	0.85	+0.5
1,091,009	+				-0.4
1,091,044	+				+0.3
1,091,062	+				-2.0
1,091,118	-				+0.1
1,091,121	+				-0.3
1,091,139	-				+0.4
1,091,193	-				+0.3
1,091,233	+				-0.2
1,091,239	-				-0.5
1,091,333	-				+0.3
1,091,473	-		SO1053	0.25	-0.5
1,091,569	-		SO1053	0.37	+0.2
1,091,603	+		SO1053	0.41	+0.4
1,091,611	-		SO1053	0.42	-0.4
1,091,736	-		SO1053	0.56	-1.3
1,091,783	+		SO1053	0.62	+0.2
1,091,783	+		SO1053	0.62	-0.1
1,091,783	+		SO1053	0.62	+0.0
1,091,823	-		SO1053	0.67	+0.7
1,091,872	-		SO1053	0.72	+0.7