Experiment: Paraquat dichloride 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0573 and hepA are separated by 261 nucleotides hepA and SO0576 are separated by 388 nucleotides
SO0573: SO0573 - hypothetical protein (NCBI ptt file), at 593,122 to 594,018
SO0573
SO0575: hepA - RNA polymerase-associated protein HepA (NCBI ptt file), at 594,280 to 597,186
hepA
SO0576: SO0576 - PhoH family protein (NCBI ptt file), at 597,575 to 598,969
SO0576
Position (kb) 594
595
596
597
598 Strain fitness (log2 ratio) -2
-1
0
1
2 at 593.473 kb on - strand, within SO0573 at 593.483 kb on - strand, within SO0573 at 593.499 kb on + strand, within SO0573 at 593.501 kb on - strand, within SO0573 at 593.559 kb on + strand, within SO0573 at 593.694 kb on + strand, within SO0573 at 593.785 kb on + strand, within SO0573 at 593.785 kb on + strand, within SO0573 at 593.793 kb on - strand, within SO0573 at 593.816 kb on + strand, within SO0573 at 593.835 kb on - strand, within SO0573 at 593.910 kb on + strand, within SO0573 at 593.910 kb on + strand, within SO0573 at 593.918 kb on + strand, within SO0573 at 593.918 kb on - strand, within SO0573 at 593.939 kb on + strand at 593.947 kb on - strand at 593.947 kb on - strand at 593.980 kb on - strand at 593.988 kb on + strand at 593.996 kb on - strand at 594.012 kb on - strand at 594.016 kb on + strand at 594.253 kb on - strand at 594.253 kb on - strand at 594.261 kb on + strand at 594.285 kb on - strand at 594.317 kb on + strand at 594.420 kb on + strand at 594.421 kb on + strand at 594.448 kb on - strand at 594.494 kb on - strand at 594.508 kb on + strand at 594.510 kb on - strand at 594.516 kb on - strand at 594.551 kb on + strand at 594.925 kb on - strand, within hepA at 594.927 kb on + strand, within hepA at 595.034 kb on + strand, within hepA at 595.123 kb on - strand, within hepA at 595.133 kb on - strand, within hepA at 595.135 kb on + strand, within hepA at 595.135 kb on + strand, within hepA at 595.135 kb on + strand, within hepA at 595.143 kb on - strand, within hepA at 595.260 kb on + strand, within hepA at 595.326 kb on - strand, within hepA at 595.388 kb on - strand, within hepA at 595.389 kb on + strand, within hepA at 595.454 kb on - strand, within hepA at 595.509 kb on - strand, within hepA at 595.555 kb on - strand, within hepA at 595.620 kb on - strand, within hepA at 595.638 kb on - strand, within hepA at 595.638 kb on - strand, within hepA at 595.734 kb on + strand, within hepA at 595.791 kb on - strand, within hepA at 595.800 kb on + strand, within hepA at 595.828 kb on - strand, within hepA at 595.852 kb on + strand, within hepA at 595.965 kb on + strand, within hepA at 596.203 kb on - strand, within hepA at 596.334 kb on + strand, within hepA at 596.357 kb on + strand, within hepA at 596.450 kb on - strand, within hepA at 596.517 kb on + strand, within hepA at 596.517 kb on + strand, within hepA at 596.517 kb on + strand, within hepA at 596.517 kb on + strand, within hepA at 596.525 kb on - strand, within hepA at 596.689 kb on - strand, within hepA at 596.697 kb on + strand, within hepA at 596.778 kb on - strand, within hepA at 596.991 kb on - strand at 597.067 kb on + strand at 597.075 kb on - strand at 597.075 kb on - strand at 597.075 kb on - strand at 597.093 kb on - strand at 597.106 kb on + strand at 597.114 kb on - strand at 597.161 kb on - strand at 597.176 kb on - strand at 597.176 kb on - strand at 597.210 kb on + strand at 597.214 kb on + strand at 597.285 kb on - strand at 597.370 kb on + strand at 597.370 kb on + strand at 597.370 kb on + strand at 597.378 kb on - strand at 597.380 kb on + strand at 597.380 kb on + strand at 597.388 kb on - strand at 597.396 kb on - strand at 597.421 kb on - strand at 597.562 kb on + strand at 597.570 kb on - strand at 597.570 kb on - strand at 597.573 kb on + strand at 597.581 kb on - strand at 597.693 kb on + strand at 597.701 kb on - strand at 597.947 kb on + strand, within SO0576 at 597.975 kb on + strand, within SO0576 at 597.980 kb on - strand, within SO0576 at 598.012 kb on + strand, within SO0576 at 598.014 kb on - strand, within SO0576 at 598.020 kb on - strand, within SO0576 at 598.113 kb on + strand, within SO0576 at 598.143 kb on - strand, within SO0576 at 598.147 kb on + strand, within SO0576
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.125 mg/ml remove 593,473 - SO0573 0.39 -0.5 593,483 - SO0573 0.40 +0.6 593,499 + SO0573 0.42 -0.1 593,501 - SO0573 0.42 +0.3 593,559 + SO0573 0.49 -0.4 593,694 + SO0573 0.64 -0.5 593,785 + SO0573 0.74 +0.1 593,785 + SO0573 0.74 -0.1 593,793 - SO0573 0.75 -0.2 593,816 + SO0573 0.77 +0.1 593,835 - SO0573 0.79 +0.6 593,910 + SO0573 0.88 +0.2 593,910 + SO0573 0.88 +0.7 593,918 + SO0573 0.89 +0.3 593,918 - SO0573 0.89 -1.4 593,939 + -0.5 593,947 - +0.6 593,947 - -0.0 593,980 - -0.1 593,988 + -0.3 593,996 - -0.1 594,012 - -1.0 594,016 + +0.0 594,253 - +0.0 594,253 - +0.4 594,261 + -0.0 594,285 - +0.1 594,317 + +0.3 594,420 + +0.1 594,421 + +0.5 594,448 - +0.4 594,494 - -0.8 594,508 + -0.4 594,510 - -0.3 594,516 - -0.1 594,551 + +0.3 594,925 - hepA SO0575 0.22 +0.5 594,927 + hepA SO0575 0.22 +0.1 595,034 + hepA SO0575 0.26 +0.5 595,123 - hepA SO0575 0.29 -0.7 595,133 - hepA SO0575 0.29 +0.6 595,135 + hepA SO0575 0.29 +0.1 595,135 + hepA SO0575 0.29 +0.2 595,135 + hepA SO0575 0.29 +0.2 595,143 - hepA SO0575 0.30 -0.1 595,260 + hepA SO0575 0.34 +1.0 595,326 - hepA SO0575 0.36 -0.2 595,388 - hepA SO0575 0.38 -0.0 595,389 + hepA SO0575 0.38 -0.3 595,454 - hepA SO0575 0.40 -0.2 595,509 - hepA SO0575 0.42 -0.1 595,555 - hepA SO0575 0.44 -1.1 595,620 - hepA SO0575 0.46 +0.8 595,638 - hepA SO0575 0.47 +0.6 595,638 - hepA SO0575 0.47 -0.8 595,734 + hepA SO0575 0.50 -0.2 595,791 - hepA SO0575 0.52 -0.4 595,800 + hepA SO0575 0.52 +0.5 595,828 - hepA SO0575 0.53 +1.0 595,852 + hepA SO0575 0.54 +0.3 595,965 + hepA SO0575 0.58 -0.1 596,203 - hepA SO0575 0.66 -1.2 596,334 + hepA SO0575 0.71 -0.1 596,357 + hepA SO0575 0.71 -0.0 596,450 - hepA SO0575 0.75 -0.1 596,517 + hepA SO0575 0.77 -0.0 596,517 + hepA SO0575 0.77 -0.2 596,517 + hepA SO0575 0.77 +2.0 596,517 + hepA SO0575 0.77 +0.7 596,525 - hepA SO0575 0.77 +0.5 596,689 - hepA SO0575 0.83 -0.2 596,697 + hepA SO0575 0.83 -2.4 596,778 - hepA SO0575 0.86 +0.6 596,991 - -0.1 597,067 + +0.1 597,075 - -0.6 597,075 - +1.0 597,075 - +0.5 597,093 - -0.1 597,106 + +1.2 597,114 - -0.4 597,161 - -0.5 597,176 - -0.1 597,176 - +0.4 597,210 + -0.7 597,214 + +0.6 597,285 - +0.4 597,370 + +0.9 597,370 + +0.5 597,370 + -0.5 597,378 - +0.6 597,380 + -0.2 597,380 + +0.1 597,388 - -0.0 597,396 - +0.3 597,421 - -1.0 597,562 + +0.8 597,570 - +0.3 597,570 - +0.2 597,573 + -0.1 597,581 - +0.3 597,693 + +0.2 597,701 - -0.0 597,947 + SO0576 0.27 +0.5 597,975 + SO0576 0.29 +0.2 597,980 - SO0576 0.29 +0.7 598,012 + SO0576 0.31 +1.2 598,014 - SO0576 0.31 +0.5 598,020 - SO0576 0.32 +0.0 598,113 + SO0576 0.39 -0.2 598,143 - SO0576 0.41 -0.1 598,147 + SO0576 0.41 -0.6
Or see this region's nucleotide sequence