Experiment: Paraquat dichloride 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0565 and SO0566 are separated by 4 nucleotides SO0566 and plsC are separated by 182 nucleotides plsC and SO0568 are separated by 43 nucleotides SO0568 and SO0569 are separated by 56 nucleotides
SO0565: SO0565 - adhesion protein, putative (NCBI ptt file), at 586,522 to 587,403
SO0565
SO0566: SO0566 - ABC 3 transport family protein (NCBI ptt file), at 587,408 to 588,187
SO0566
SO0567: plsC - 1-acyl-sn-glycerol-3-phosphate acyltransferase (NCBI ptt file), at 588,370 to 589,113
plsC
SO0568: SO0568 - conserved hypothetical protein (NCBI ptt file), at 589,157 to 589,561
SO0568
SO0569: SO0569 - sensory box/GGDEF family protein (NCBI ptt file), at 589,618 to 590,592
SO0569
Position (kb) 588
589
590 Strain fitness (log2 ratio) -1
0
1
2 at 587.370 kb on - strand at 587.370 kb on - strand at 587.370 kb on - strand at 587.370 kb on - strand at 587.576 kb on + strand, within SO0566 at 587.797 kb on - strand, within SO0566 at 587.816 kb on + strand, within SO0566 at 587.822 kb on + strand, within SO0566 at 587.926 kb on - strand, within SO0566 at 588.005 kb on + strand, within SO0566 at 588.027 kb on - strand, within SO0566 at 588.141 kb on + strand at 588.154 kb on - strand at 588.165 kb on + strand at 588.165 kb on + strand at 588.173 kb on - strand at 588.176 kb on + strand at 588.394 kb on - strand at 588.394 kb on - strand at 588.472 kb on + strand, within plsC at 588.540 kb on + strand, within plsC at 588.612 kb on + strand, within plsC at 588.620 kb on - strand, within plsC at 588.620 kb on - strand, within plsC at 588.625 kb on + strand, within plsC at 588.679 kb on + strand, within plsC at 588.976 kb on - strand, within plsC at 589.203 kb on + strand, within SO0568 at 589.208 kb on + strand, within SO0568 at 589.208 kb on + strand, within SO0568 at 589.208 kb on + strand, within SO0568 at 589.252 kb on - strand, within SO0568 at 589.254 kb on + strand, within SO0568 at 589.254 kb on + strand, within SO0568 at 589.255 kb on - strand, within SO0568 at 589.383 kb on + strand, within SO0568 at 589.541 kb on + strand at 589.556 kb on + strand at 589.620 kb on + strand at 589.642 kb on + strand at 589.650 kb on - strand at 589.650 kb on - strand at 589.650 kb on - strand at 589.681 kb on + strand at 589.749 kb on + strand, within SO0569 at 589.749 kb on + strand, within SO0569 at 589.749 kb on + strand, within SO0569 at 589.749 kb on + strand, within SO0569 at 589.757 kb on - strand, within SO0569 at 589.757 kb on - strand, within SO0569 at 589.757 kb on - strand, within SO0569 at 589.782 kb on - strand, within SO0569 at 589.782 kb on - strand, within SO0569 at 589.834 kb on + strand, within SO0569 at 589.861 kb on + strand, within SO0569 at 589.869 kb on - strand, within SO0569 at 589.870 kb on - strand, within SO0569 at 589.879 kb on + strand, within SO0569 at 589.896 kb on + strand, within SO0569 at 589.933 kb on + strand, within SO0569 at 589.965 kb on - strand, within SO0569
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.125 mg/ml remove 587,370 - -0.1 587,370 - +1.7 587,370 - -0.1 587,370 - -0.1 587,576 + SO0566 0.22 -0.0 587,797 - SO0566 0.50 +0.5 587,816 + SO0566 0.52 -0.3 587,822 + SO0566 0.53 +0.0 587,926 - SO0566 0.66 -0.3 588,005 + SO0566 0.77 -0.3 588,027 - SO0566 0.79 +0.0 588,141 + -0.3 588,154 - -0.1 588,165 + -0.1 588,165 + -0.0 588,173 - -0.6 588,176 + +0.0 588,394 - -0.8 588,394 - +0.4 588,472 + plsC SO0567 0.14 -0.8 588,540 + plsC SO0567 0.23 +0.1 588,612 + plsC SO0567 0.33 -1.3 588,620 - plsC SO0567 0.34 -1.0 588,620 - plsC SO0567 0.34 +0.0 588,625 + plsC SO0567 0.34 -0.8 588,679 + plsC SO0567 0.42 +0.6 588,976 - plsC SO0567 0.81 +0.0 589,203 + SO0568 0.11 +2.1 589,208 + SO0568 0.13 -0.5 589,208 + SO0568 0.13 -0.4 589,208 + SO0568 0.13 -0.3 589,252 - SO0568 0.23 +0.0 589,254 + SO0568 0.24 +0.6 589,254 + SO0568 0.24 +1.0 589,255 - SO0568 0.24 -0.8 589,383 + SO0568 0.56 -0.7 589,541 + -0.7 589,556 + -0.2 589,620 + +0.3 589,642 + +0.3 589,650 - +0.1 589,650 - -0.1 589,650 - -0.4 589,681 + +0.1 589,749 + SO0569 0.13 -0.1 589,749 + SO0569 0.13 -0.1 589,749 + SO0569 0.13 +0.3 589,749 + SO0569 0.13 +0.1 589,757 - SO0569 0.14 -0.4 589,757 - SO0569 0.14 -0.4 589,757 - SO0569 0.14 +0.6 589,782 - SO0569 0.17 +0.1 589,782 - SO0569 0.17 +0.7 589,834 + SO0569 0.22 +0.3 589,861 + SO0569 0.25 -0.6 589,869 - SO0569 0.26 +0.6 589,870 - SO0569 0.26 +1.3 589,879 + SO0569 0.27 -0.1 589,896 + SO0569 0.29 -0.6 589,933 + SO0569 0.32 -0.0 589,965 - SO0569 0.36 +0.1
Or see this region's nucleotide sequence