Strain Fitness in Shewanella oneidensis MR-1 around SO0408
Experiment: Paraquat dichloride 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.125 mg/ml |
---|---|---|---|---|---|
remove | |||||
424,064 | + | SO0407 | 0.25 | -0.1 | |
424,098 | - | SO0407 | 0.28 | -0.6 | |
424,130 | - | SO0407 | 0.30 | +0.4 | |
424,213 | + | SO0407 | 0.37 | +0.6 | |
424,216 | + | SO0407 | 0.37 | -0.4 | |
424,342 | + | SO0407 | 0.46 | +0.8 | |
424,342 | + | SO0407 | 0.46 | -0.0 | |
424,350 | - | SO0407 | 0.47 | +0.0 | |
424,554 | + | SO0407 | 0.62 | -0.7 | |
424,564 | + | SO0407 | 0.63 | -0.5 | |
424,582 | - | SO0407 | 0.65 | +0.5 | |
424,584 | + | SO0407 | 0.65 | +0.9 | |
424,630 | + | SO0407 | 0.68 | +0.5 | |
424,630 | - | SO0407 | 0.68 | -2.4 | |
424,664 | + | SO0407 | 0.71 | -1.0 | |
424,744 | + | SO0407 | 0.77 | -0.1 | |
424,756 | + | SO0407 | 0.78 | +0.1 | |
424,780 | + | SO0407 | 0.80 | +0.5 | |
424,965 | + | -0.5 | |||
425,078 | + | -0.1 | |||
425,123 | - | +0.4 | |||
425,229 | - | gppA | SO0408 | 0.19 | -1.2 |
425,258 | - | gppA | SO0408 | 0.23 | +0.8 |
425,300 | + | gppA | SO0408 | 0.27 | +0.2 |
425,341 | - | gppA | SO0408 | 0.32 | -0.2 |
425,391 | + | gppA | SO0408 | 0.37 | -0.2 |
425,443 | + | gppA | SO0408 | 0.43 | +0.3 |
425,471 | - | gppA | SO0408 | 0.46 | -0.5 |
425,568 | - | gppA | SO0408 | 0.56 | +0.2 |
425,591 | + | gppA | SO0408 | 0.59 | +0.5 |
425,623 | + | gppA | SO0408 | 0.62 | +0.1 |
425,645 | + | gppA | SO0408 | 0.65 | +0.8 |
425,966 | + | +0.6 | |||
426,044 | - | -0.4 | |||
426,118 | - | +0.1 | |||
426,156 | + | SO0409 | 0.16 | -0.5 | |
426,162 | + | SO0409 | 0.17 | -0.0 | |
426,164 | - | SO0409 | 0.18 | -0.1 | |
426,181 | + | SO0409 | 0.21 | +0.1 | |
426,356 | + | SO0409 | 0.53 | -0.1 | |
426,369 | + | SO0409 | 0.56 | +0.2 | |
426,369 | + | SO0409 | 0.56 | -0.7 | |
426,369 | + | SO0409 | 0.56 | -0.6 | |
426,369 | + | SO0409 | 0.56 | +0.2 | |
426,369 | + | SO0409 | 0.56 | +0.2 | |
426,377 | - | SO0409 | 0.57 | +0.6 | |
426,377 | - | SO0409 | 0.57 | +0.3 | |
426,447 | - | SO0409 | 0.70 | +0.2 | |
426,593 | + | -0.2 | |||
426,719 | + | -0.6 | |||
426,849 | + | mutT | SO0410 | 0.26 | -0.1 |
Or see this region's nucleotide sequence