Experiment: Paraquat dichloride 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0407 and gppA are separated by 0 nucleotides gppA and SO0409 are separated by 99 nucleotides SO0409 and mutT are separated by 138 nucleotides
SO0407: SO0407 - ATP-dependent RNA helicase, DEAD box family (NCBI ptt file), at 423,730 to 425,049
SO0407
SO0408: gppA - guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase (NCBI ptt file), at 425,050 to 425,970
gppA
SO0409: SO0409 - hypothetical protein (NCBI ptt file), at 426,070 to 426,606
SO0409
SO0410: mutT - mutator mutT protein (NCBI ptt file), at 426,745 to 427,137
mutT
Position (kb) 425
426 Strain fitness (log2 ratio) -2
-1
0
1 at 424.064 kb on + strand, within SO0407 at 424.098 kb on - strand, within SO0407 at 424.130 kb on - strand, within SO0407 at 424.213 kb on + strand, within SO0407 at 424.216 kb on + strand, within SO0407 at 424.342 kb on + strand, within SO0407 at 424.342 kb on + strand, within SO0407 at 424.350 kb on - strand, within SO0407 at 424.554 kb on + strand, within SO0407 at 424.564 kb on + strand, within SO0407 at 424.582 kb on - strand, within SO0407 at 424.584 kb on + strand, within SO0407 at 424.630 kb on + strand, within SO0407 at 424.630 kb on - strand, within SO0407 at 424.664 kb on + strand, within SO0407 at 424.744 kb on + strand, within SO0407 at 424.756 kb on + strand, within SO0407 at 424.780 kb on + strand, within SO0407 at 424.965 kb on + strand at 425.078 kb on + strand at 425.123 kb on - strand at 425.229 kb on - strand, within gppA at 425.258 kb on - strand, within gppA at 425.300 kb on + strand, within gppA at 425.341 kb on - strand, within gppA at 425.391 kb on + strand, within gppA at 425.443 kb on + strand, within gppA at 425.471 kb on - strand, within gppA at 425.568 kb on - strand, within gppA at 425.591 kb on + strand, within gppA at 425.623 kb on + strand, within gppA at 425.645 kb on + strand, within gppA at 425.966 kb on + strand at 426.044 kb on - strand at 426.118 kb on - strand at 426.156 kb on + strand, within SO0409 at 426.162 kb on + strand, within SO0409 at 426.164 kb on - strand, within SO0409 at 426.181 kb on + strand, within SO0409 at 426.356 kb on + strand, within SO0409 at 426.369 kb on + strand, within SO0409 at 426.369 kb on + strand, within SO0409 at 426.369 kb on + strand, within SO0409 at 426.369 kb on + strand, within SO0409 at 426.369 kb on + strand, within SO0409 at 426.377 kb on - strand, within SO0409 at 426.377 kb on - strand, within SO0409 at 426.447 kb on - strand, within SO0409 at 426.593 kb on + strand at 426.719 kb on + strand at 426.849 kb on + strand, within mutT
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.125 mg/ml remove 424,064 + SO0407 0.25 -0.1 424,098 - SO0407 0.28 -0.6 424,130 - SO0407 0.30 +0.4 424,213 + SO0407 0.37 +0.6 424,216 + SO0407 0.37 -0.4 424,342 + SO0407 0.46 +0.8 424,342 + SO0407 0.46 -0.0 424,350 - SO0407 0.47 +0.0 424,554 + SO0407 0.62 -0.7 424,564 + SO0407 0.63 -0.5 424,582 - SO0407 0.65 +0.5 424,584 + SO0407 0.65 +0.9 424,630 + SO0407 0.68 +0.5 424,630 - SO0407 0.68 -2.4 424,664 + SO0407 0.71 -1.0 424,744 + SO0407 0.77 -0.1 424,756 + SO0407 0.78 +0.1 424,780 + SO0407 0.80 +0.5 424,965 + -0.5 425,078 + -0.1 425,123 - +0.4 425,229 - gppA SO0408 0.19 -1.2 425,258 - gppA SO0408 0.23 +0.8 425,300 + gppA SO0408 0.27 +0.2 425,341 - gppA SO0408 0.32 -0.2 425,391 + gppA SO0408 0.37 -0.2 425,443 + gppA SO0408 0.43 +0.3 425,471 - gppA SO0408 0.46 -0.5 425,568 - gppA SO0408 0.56 +0.2 425,591 + gppA SO0408 0.59 +0.5 425,623 + gppA SO0408 0.62 +0.1 425,645 + gppA SO0408 0.65 +0.8 425,966 + +0.6 426,044 - -0.4 426,118 - +0.1 426,156 + SO0409 0.16 -0.5 426,162 + SO0409 0.17 -0.0 426,164 - SO0409 0.18 -0.1 426,181 + SO0409 0.21 +0.1 426,356 + SO0409 0.53 -0.1 426,369 + SO0409 0.56 +0.2 426,369 + SO0409 0.56 -0.7 426,369 + SO0409 0.56 -0.6 426,369 + SO0409 0.56 +0.2 426,369 + SO0409 0.56 +0.2 426,377 - SO0409 0.57 +0.6 426,377 - SO0409 0.57 +0.3 426,447 - SO0409 0.70 +0.2 426,593 + -0.2 426,719 + -0.6 426,849 + mutT SO0410 0.26 -0.1
Or see this region's nucleotide sequence