Strain Fitness in Marinobacter adhaerens HP15 around HP15_76

Experiment: L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_75 and HP15_76 overlap by 4 nucleotidesHP15_76 and HP15_77 are separated by 443 nucleotidesHP15_77 and HP15_78 are separated by 68 nucleotidesHP15_78 and HP15_79 are separated by 85 nucleotides HP15_75: HP15_75 - conserved hypothetical protein, at 81,817 to 84,126 _75 HP15_76: HP15_76 - phage integrase family protein-like protein, at 84,123 to 87,473 _76 HP15_77: HP15_77 - hypothetical protein, at 87,917 to 88,117 _77 HP15_78: HP15_78 - hypothetical protein, at 88,186 to 88,380 _78 HP15_79: HP15_79 - phage integrase family protein, at 88,466 to 89,674 _79 Position (kb) 84 85 86 87 88Strain fitness (log2 ratio) -2 -1 0 1 2at 83.429 kb on + strand, within HP15_75at 83.475 kb on - strand, within HP15_75at 83.597 kb on - strand, within HP15_75at 83.607 kb on - strand, within HP15_75at 83.660 kb on - strand, within HP15_75at 83.687 kb on - strand, within HP15_75at 83.701 kb on + strand, within HP15_75at 83.710 kb on + strand, within HP15_75at 83.718 kb on - strand, within HP15_75at 83.720 kb on + strand, within HP15_75at 83.726 kb on - strand, within HP15_75at 83.728 kb on - strand, within HP15_75at 83.728 kb on - strand, within HP15_75at 83.795 kb on + strand, within HP15_75at 83.795 kb on + strand, within HP15_75at 83.803 kb on - strand, within HP15_75at 83.812 kb on - strand, within HP15_75at 83.889 kb on + strand, within HP15_75at 83.897 kb on - strandat 83.912 kb on - strandat 83.925 kb on + strandat 83.926 kb on - strandat 84.007 kb on - strandat 84.026 kb on - strandat 84.054 kb on + strandat 84.073 kb on - strandat 84.075 kb on - strandat 84.147 kb on + strandat 84.147 kb on + strandat 84.168 kb on + strandat 84.289 kb on + strandat 84.299 kb on + strandat 84.304 kb on + strandat 84.307 kb on - strandat 84.312 kb on - strandat 84.312 kb on - strandat 84.314 kb on + strandat 84.326 kb on + strandat 84.394 kb on + strandat 84.409 kb on - strandat 84.411 kb on + strandat 84.453 kb on + strandat 84.535 kb on - strand, within HP15_76at 84.535 kb on - strand, within HP15_76at 84.546 kb on + strand, within HP15_76at 84.546 kb on + strand, within HP15_76at 84.546 kb on + strand, within HP15_76at 84.546 kb on + strand, within HP15_76at 84.548 kb on + strand, within HP15_76at 84.548 kb on + strand, within HP15_76at 84.549 kb on - strand, within HP15_76at 84.587 kb on - strand, within HP15_76at 84.607 kb on + strand, within HP15_76at 84.675 kb on - strand, within HP15_76at 84.736 kb on + strand, within HP15_76at 84.930 kb on + strand, within HP15_76at 84.973 kb on - strand, within HP15_76at 84.986 kb on + strand, within HP15_76at 84.994 kb on - strand, within HP15_76at 85.110 kb on + strand, within HP15_76at 85.297 kb on - strand, within HP15_76at 85.327 kb on + strand, within HP15_76at 85.327 kb on + strand, within HP15_76at 85.329 kb on - strand, within HP15_76at 85.335 kb on - strand, within HP15_76at 85.335 kb on - strand, within HP15_76at 85.436 kb on + strand, within HP15_76at 85.444 kb on - strand, within HP15_76at 85.468 kb on - strand, within HP15_76at 85.468 kb on - strand, within HP15_76at 85.509 kb on - strand, within HP15_76at 85.524 kb on - strand, within HP15_76at 85.524 kb on - strand, within HP15_76at 85.526 kb on + strand, within HP15_76at 85.534 kb on - strand, within HP15_76at 85.553 kb on + strand, within HP15_76at 85.553 kb on + strand, within HP15_76at 85.553 kb on + strand, within HP15_76at 85.553 kb on + strand, within HP15_76at 85.553 kb on + strand, within HP15_76at 85.561 kb on - strand, within HP15_76at 85.613 kb on - strand, within HP15_76at 85.675 kb on - strand, within HP15_76at 85.770 kb on + strand, within HP15_76at 85.790 kb on + strand, within HP15_76at 85.804 kb on + strand, within HP15_76at 85.877 kb on - strand, within HP15_76at 85.932 kb on - strand, within HP15_76at 86.076 kb on - strand, within HP15_76at 86.080 kb on - strand, within HP15_76at 86.184 kb on + strand, within HP15_76at 86.184 kb on - strand, within HP15_76at 86.186 kb on + strand, within HP15_76at 86.186 kb on + strand, within HP15_76at 86.186 kb on + strand, within HP15_76at 86.186 kb on + strand, within HP15_76at 86.194 kb on - strand, within HP15_76at 86.194 kb on - strand, within HP15_76at 86.194 kb on - strand, within HP15_76at 86.210 kb on + strand, within HP15_76at 86.228 kb on + strand, within HP15_76at 86.231 kb on + strand, within HP15_76at 86.231 kb on + strand, within HP15_76at 86.236 kb on - strand, within HP15_76at 86.236 kb on - strand, within HP15_76at 86.236 kb on - strand, within HP15_76at 86.254 kb on + strand, within HP15_76at 86.254 kb on + strand, within HP15_76at 86.254 kb on + strand, within HP15_76at 86.262 kb on - strand, within HP15_76at 86.338 kb on + strand, within HP15_76at 86.348 kb on + strand, within HP15_76at 86.367 kb on + strand, within HP15_76at 86.375 kb on - strand, within HP15_76at 86.422 kb on + strand, within HP15_76at 86.422 kb on + strand, within HP15_76at 86.422 kb on + strand, within HP15_76at 86.422 kb on + strand, within HP15_76at 86.430 kb on - strand, within HP15_76at 86.430 kb on - strand, within HP15_76at 86.430 kb on - strand, within HP15_76at 86.472 kb on - strand, within HP15_76at 86.537 kb on + strand, within HP15_76at 86.543 kb on - strand, within HP15_76at 86.562 kb on - strand, within HP15_76at 86.635 kb on + strand, within HP15_76at 86.666 kb on + strand, within HP15_76at 86.719 kb on - strand, within HP15_76at 86.828 kb on - strand, within HP15_76at 86.828 kb on - strand, within HP15_76at 86.828 kb on - strand, within HP15_76at 87.023 kb on - strand, within HP15_76at 87.050 kb on + strand, within HP15_76at 87.058 kb on - strand, within HP15_76at 87.128 kb on - strand, within HP15_76at 87.133 kb on - strand, within HP15_76at 87.133 kb on - strand, within HP15_76at 87.133 kb on - strand, within HP15_76at 87.133 kb on - strand, within HP15_76at 87.133 kb on - strand, within HP15_76at 87.133 kb on - strand, within HP15_76at 87.133 kb on - strand, within HP15_76at 87.171 kb on + strandat 87.351 kb on + strandat 87.359 kb on + strandat 87.448 kb on - strandat 87.500 kb on - strandat 87.537 kb on - strandat 87.617 kb on + strandat 87.617 kb on + strandat 87.717 kb on - strandat 87.854 kb on - strandat 87.872 kb on + strandat 88.120 kb on + strandat 88.120 kb on + strandat 88.120 kb on + strandat 88.128 kb on - strandat 88.149 kb on + strandat 88.152 kb on - strandat 88.197 kb on + strandat 88.252 kb on - strand, within HP15_78at 88.292 kb on - strand, within HP15_78at 88.292 kb on - strand, within HP15_78at 88.380 kb on + strandat 88.423 kb on - strandat 88.463 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate
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83,429 + HP15_75 0.70 +0.5
83,475 - HP15_75 0.72 +0.2
83,597 - HP15_75 0.77 -0.2
83,607 - HP15_75 0.77 +0.5
83,660 - HP15_75 0.80 -0.1
83,687 - HP15_75 0.81 +0.4
83,701 + HP15_75 0.82 -2.4
83,710 + HP15_75 0.82 +0.1
83,718 - HP15_75 0.82 +0.1
83,720 + HP15_75 0.82 -0.5
83,726 - HP15_75 0.83 -0.4
83,728 - HP15_75 0.83 +0.2
83,728 - HP15_75 0.83 -0.2
83,795 + HP15_75 0.86 +0.2
83,795 + HP15_75 0.86 +0.1
83,803 - HP15_75 0.86 +0.3
83,812 - HP15_75 0.86 +0.3
83,889 + HP15_75 0.90 +0.0
83,897 - +0.7
83,912 - -0.1
83,925 + -0.0
83,926 - +0.5
84,007 - -0.1
84,026 - -0.2
84,054 + +0.6
84,073 - -0.1
84,075 - +0.2
84,147 + +0.0
84,147 + +0.3
84,168 + +0.5
84,289 + +0.6
84,299 + -0.4
84,304 + +0.5
84,307 - +0.9
84,312 - -0.4
84,312 - +0.4
84,314 + +0.7
84,326 + +0.7
84,394 + +0.6
84,409 - -0.3
84,411 + +0.8
84,453 + +0.3
84,535 - HP15_76 0.12 +0.2
84,535 - HP15_76 0.12 +0.5
84,546 + HP15_76 0.13 +0.1
84,546 + HP15_76 0.13 +0.9
84,546 + HP15_76 0.13 +0.1
84,546 + HP15_76 0.13 +1.3
84,548 + HP15_76 0.13 +0.3
84,548 + HP15_76 0.13 +0.1
84,549 - HP15_76 0.13 -0.1
84,587 - HP15_76 0.14 +0.1
84,607 + HP15_76 0.14 +0.1
84,675 - HP15_76 0.16 +0.3
84,736 + HP15_76 0.18 -0.1
84,930 + HP15_76 0.24 -0.2
84,973 - HP15_76 0.25 +0.0
84,986 + HP15_76 0.26 +0.4
84,994 - HP15_76 0.26 +0.1
85,110 + HP15_76 0.29 -0.2
85,297 - HP15_76 0.35 +1.0
85,327 + HP15_76 0.36 +0.6
85,327 + HP15_76 0.36 -0.4
85,329 - HP15_76 0.36 +0.1
85,335 - HP15_76 0.36 +1.7
85,335 - HP15_76 0.36 -0.8
85,436 + HP15_76 0.39 -0.6
85,444 - HP15_76 0.39 +1.0
85,468 - HP15_76 0.40 -0.0
85,468 - HP15_76 0.40 -0.2
85,509 - HP15_76 0.41 -0.3
85,524 - HP15_76 0.42 +0.3
85,524 - HP15_76 0.42 -0.1
85,526 + HP15_76 0.42 +1.0
85,534 - HP15_76 0.42 +0.2
85,553 + HP15_76 0.43 +0.6
85,553 + HP15_76 0.43 -0.0
85,553 + HP15_76 0.43 -0.6
85,553 + HP15_76 0.43 +0.6
85,553 + HP15_76 0.43 +0.3
85,561 - HP15_76 0.43 +0.1
85,613 - HP15_76 0.44 -1.2
85,675 - HP15_76 0.46 +0.4
85,770 + HP15_76 0.49 -0.4
85,790 + HP15_76 0.50 +0.6
85,804 + HP15_76 0.50 -0.5
85,877 - HP15_76 0.52 +0.6
85,932 - HP15_76 0.54 -0.3
86,076 - HP15_76 0.58 +0.5
86,080 - HP15_76 0.58 +1.4
86,184 + HP15_76 0.62 +0.8
86,184 - HP15_76 0.62 +1.9
86,186 + HP15_76 0.62 -0.0
86,186 + HP15_76 0.62 -0.0
86,186 + HP15_76 0.62 -0.2
86,186 + HP15_76 0.62 -0.1
86,194 - HP15_76 0.62 +0.2
86,194 - HP15_76 0.62 -0.0
86,194 - HP15_76 0.62 +0.3
86,210 + HP15_76 0.62 +0.3
86,228 + HP15_76 0.63 +0.0
86,231 + HP15_76 0.63 -0.6
86,231 + HP15_76 0.63 -0.1
86,236 - HP15_76 0.63 +0.4
86,236 - HP15_76 0.63 -0.5
86,236 - HP15_76 0.63 -0.2
86,254 + HP15_76 0.64 +0.9
86,254 + HP15_76 0.64 -0.2
86,254 + HP15_76 0.64 +0.5
86,262 - HP15_76 0.64 -0.3
86,338 + HP15_76 0.66 +0.6
86,348 + HP15_76 0.66 -0.1
86,367 + HP15_76 0.67 +0.5
86,375 - HP15_76 0.67 +0.0
86,422 + HP15_76 0.69 +1.2
86,422 + HP15_76 0.69 +0.2
86,422 + HP15_76 0.69 +0.5
86,422 + HP15_76 0.69 +0.5
86,430 - HP15_76 0.69 +0.7
86,430 - HP15_76 0.69 -0.2
86,430 - HP15_76 0.69 +1.0
86,472 - HP15_76 0.70 +1.6
86,537 + HP15_76 0.72 +0.2
86,543 - HP15_76 0.72 +1.4
86,562 - HP15_76 0.73 +0.4
86,635 + HP15_76 0.75 +0.5
86,666 + HP15_76 0.76 +0.6
86,719 - HP15_76 0.77 -0.2
86,828 - HP15_76 0.81 +0.1
86,828 - HP15_76 0.81 -0.2
86,828 - HP15_76 0.81 -0.2
87,023 - HP15_76 0.87 +0.7
87,050 + HP15_76 0.87 +0.3
87,058 - HP15_76 0.88 -0.3
87,128 - HP15_76 0.90 +0.8
87,133 - HP15_76 0.90 +0.6
87,133 - HP15_76 0.90 +0.1
87,133 - HP15_76 0.90 +0.7
87,133 - HP15_76 0.90 +0.2
87,133 - HP15_76 0.90 -0.0
87,133 - HP15_76 0.90 +0.9
87,133 - HP15_76 0.90 +0.6
87,171 + -0.7
87,351 + -0.1
87,359 + +0.1
87,448 - +1.0
87,500 - +0.7
87,537 - -0.3
87,617 + +0.2
87,617 + -0.3
87,717 - -0.5
87,854 - -0.0
87,872 + +0.6
88,120 + -0.4
88,120 + -0.1
88,120 + +0.4
88,128 - +0.1
88,149 + +0.6
88,152 - +0.6
88,197 + +0.1
88,252 - HP15_78 0.34 -0.3
88,292 - HP15_78 0.54 +1.3
88,292 - HP15_78 0.54 -0.8
88,380 + +0.0
88,423 - -0.2
88,463 + -0.3

Or see this region's nucleotide sequence