Strain Fitness in Marinobacter adhaerens HP15 around HP15_3261

Experiment: L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3259 and HP15_3260 are separated by 2 nucleotidesHP15_3260 and HP15_3261 are separated by 226 nucleotidesHP15_3261 and HP15_3262 overlap by 1 nucleotides HP15_3259: HP15_3259 - NolW domain protein, at 3,412,919 to 3,413,707 _3259 HP15_3260: HP15_3260 - heat shock protein DnaJ domain protein, at 3,413,710 to 3,414,216 _3260 HP15_3261: HP15_3261 - efflux transporter, RND family, MFP subunit, at 3,414,443 to 3,415,543 _3261 HP15_3262: HP15_3262 - multidrug resistance protein, at 3,415,543 to 3,418,632 _3262 Position (kb) 3414 3415 3416Strain fitness (log2 ratio) -1 0 1at 3413.586 kb on + strand, within HP15_3259at 3413.616 kb on + strand, within HP15_3259at 3413.676 kb on + strandat 3413.691 kb on + strandat 3414.087 kb on + strand, within HP15_3260at 3414.276 kb on - strandat 3414.501 kb on - strandat 3414.731 kb on + strand, within HP15_3261at 3414.731 kb on + strand, within HP15_3261at 3414.739 kb on - strand, within HP15_3261at 3414.739 kb on - strand, within HP15_3261at 3414.822 kb on + strand, within HP15_3261at 3414.950 kb on + strand, within HP15_3261at 3415.061 kb on - strand, within HP15_3261at 3415.061 kb on - strand, within HP15_3261at 3415.133 kb on - strand, within HP15_3261at 3415.136 kb on + strand, within HP15_3261at 3415.163 kb on - strand, within HP15_3261at 3415.183 kb on + strand, within HP15_3261at 3415.184 kb on - strand, within HP15_3261at 3415.201 kb on - strand, within HP15_3261at 3415.201 kb on - strand, within HP15_3261at 3415.201 kb on - strand, within HP15_3261at 3415.203 kb on + strand, within HP15_3261at 3415.221 kb on - strand, within HP15_3261at 3415.303 kb on - strand, within HP15_3261at 3415.559 kb on + strandat 3415.660 kb on - strandat 3415.706 kb on + strandat 3415.706 kb on + strandat 3415.714 kb on - strandat 3415.850 kb on - strandat 3415.850 kb on - strandat 3415.910 kb on + strand, within HP15_3262at 3415.951 kb on + strand, within HP15_3262at 3416.018 kb on + strand, within HP15_3262at 3416.023 kb on + strand, within HP15_3262at 3416.028 kb on + strand, within HP15_3262at 3416.182 kb on + strand, within HP15_3262at 3416.201 kb on - strand, within HP15_3262at 3416.280 kb on + strand, within HP15_3262at 3416.288 kb on - strand, within HP15_3262at 3416.290 kb on + strand, within HP15_3262at 3416.290 kb on + strand, within HP15_3262at 3416.328 kb on - strand, within HP15_3262at 3416.364 kb on - strand, within HP15_3262at 3416.433 kb on + strand, within HP15_3262

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate
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3,413,586 + HP15_3259 0.85 +0.3
3,413,616 + HP15_3259 0.88 +0.2
3,413,676 + +0.6
3,413,691 + -0.3
3,414,087 + HP15_3260 0.74 -0.4
3,414,276 - +0.0
3,414,501 - +0.2
3,414,731 + HP15_3261 0.26 +1.2
3,414,731 + HP15_3261 0.26 -0.0
3,414,739 - HP15_3261 0.27 +0.5
3,414,739 - HP15_3261 0.27 +0.3
3,414,822 + HP15_3261 0.34 -0.3
3,414,950 + HP15_3261 0.46 -1.0
3,415,061 - HP15_3261 0.56 +0.1
3,415,061 - HP15_3261 0.56 +0.2
3,415,133 - HP15_3261 0.63 +0.4
3,415,136 + HP15_3261 0.63 +0.1
3,415,163 - HP15_3261 0.65 +0.0
3,415,183 + HP15_3261 0.67 +0.1
3,415,184 - HP15_3261 0.67 +0.5
3,415,201 - HP15_3261 0.69 +0.3
3,415,201 - HP15_3261 0.69 +0.3
3,415,201 - HP15_3261 0.69 -0.1
3,415,203 + HP15_3261 0.69 -0.8
3,415,221 - HP15_3261 0.71 -0.2
3,415,303 - HP15_3261 0.78 +0.0
3,415,559 + +0.7
3,415,660 - +0.0
3,415,706 + +1.0
3,415,706 + -0.4
3,415,714 - +0.7
3,415,850 - -0.1
3,415,850 - +0.3
3,415,910 + HP15_3262 0.12 +0.0
3,415,951 + HP15_3262 0.13 +0.7
3,416,018 + HP15_3262 0.15 -0.1
3,416,023 + HP15_3262 0.16 +0.0
3,416,028 + HP15_3262 0.16 +0.2
3,416,182 + HP15_3262 0.21 +1.1
3,416,201 - HP15_3262 0.21 -0.0
3,416,280 + HP15_3262 0.24 -0.2
3,416,288 - HP15_3262 0.24 -0.6
3,416,290 + HP15_3262 0.24 -0.3
3,416,290 + HP15_3262 0.24 +0.5
3,416,328 - HP15_3262 0.25 +0.0
3,416,364 - HP15_3262 0.27 -0.1
3,416,433 + HP15_3262 0.29 +0.3

Or see this region's nucleotide sequence