Strain Fitness in Marinobacter adhaerens HP15 around HP15_2233

Experiment: L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2231 and HP15_2232 are separated by 99 nucleotidesHP15_2232 and HP15_2233 are separated by 115 nucleotidesHP15_2233 and HP15_2234 are separated by 52 nucleotides HP15_2231: HP15_2231 - pitrilysin metallopeptidase 1, at 2,348,903 to 2,351,827 _2231 HP15_2232: HP15_2232 - conserved hypothetical protein, membrane, at 2,351,927 to 2,352,388 _2232 HP15_2233: HP15_2233 - MORN repeat protein, at 2,352,504 to 2,353,817 _2233 HP15_2234: HP15_2234 - CheY-like receiver protein, at 2,353,870 to 2,354,964 _2234 Position (kb) 2352 2353 2354Strain fitness (log2 ratio) -2 -1 0 1 2at 2351.622 kb on - strandat 2351.748 kb on - strandat 2351.800 kb on - strandat 2351.905 kb on + strandat 2351.905 kb on - strandat 2351.914 kb on - strandat 2351.921 kb on - strandat 2352.056 kb on - strand, within HP15_2232at 2352.144 kb on + strand, within HP15_2232at 2352.165 kb on + strand, within HP15_2232at 2352.353 kb on - strandat 2352.442 kb on - strandat 2352.562 kb on - strandat 2352.692 kb on + strand, within HP15_2233at 2352.705 kb on - strand, within HP15_2233at 2352.711 kb on + strand, within HP15_2233at 2352.775 kb on + strand, within HP15_2233at 2352.775 kb on + strand, within HP15_2233at 2352.999 kb on - strand, within HP15_2233at 2353.026 kb on + strand, within HP15_2233at 2353.180 kb on + strand, within HP15_2233at 2353.256 kb on + strand, within HP15_2233at 2353.303 kb on - strand, within HP15_2233at 2353.303 kb on - strand, within HP15_2233at 2353.428 kb on + strand, within HP15_2233at 2353.428 kb on + strand, within HP15_2233at 2353.436 kb on - strand, within HP15_2233at 2353.502 kb on + strand, within HP15_2233at 2353.502 kb on + strand, within HP15_2233at 2353.599 kb on + strand, within HP15_2233at 2353.760 kb on + strandat 2353.901 kb on + strandat 2353.902 kb on + strandat 2353.909 kb on - strandat 2353.910 kb on - strandat 2354.010 kb on - strand, within HP15_2234at 2354.057 kb on + strand, within HP15_2234at 2354.065 kb on - strand, within HP15_2234at 2354.380 kb on + strand, within HP15_2234at 2354.398 kb on + strand, within HP15_2234at 2354.475 kb on + strand, within HP15_2234at 2354.563 kb on + strand, within HP15_2234at 2354.631 kb on + strand, within HP15_2234at 2354.636 kb on + strand, within HP15_2234at 2354.692 kb on + strand, within HP15_2234at 2354.738 kb on - strand, within HP15_2234at 2354.738 kb on - strand, within HP15_2234

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate
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2,351,622 - -0.5
2,351,748 - -0.2
2,351,800 - +0.1
2,351,905 + +0.4
2,351,905 - +0.8
2,351,914 - +0.5
2,351,921 - -0.2
2,352,056 - HP15_2232 0.28 +0.3
2,352,144 + HP15_2232 0.47 +0.5
2,352,165 + HP15_2232 0.52 +0.8
2,352,353 - -0.3
2,352,442 - -0.1
2,352,562 - -0.2
2,352,692 + HP15_2233 0.14 -0.3
2,352,705 - HP15_2233 0.15 -0.7
2,352,711 + HP15_2233 0.16 -0.2
2,352,775 + HP15_2233 0.21 -2.1
2,352,775 + HP15_2233 0.21 +0.5
2,352,999 - HP15_2233 0.38 -0.6
2,353,026 + HP15_2233 0.40 +0.0
2,353,180 + HP15_2233 0.51 -0.0
2,353,256 + HP15_2233 0.57 -0.2
2,353,303 - HP15_2233 0.61 -0.7
2,353,303 - HP15_2233 0.61 -0.0
2,353,428 + HP15_2233 0.70 -0.2
2,353,428 + HP15_2233 0.70 -0.0
2,353,436 - HP15_2233 0.71 -0.0
2,353,502 + HP15_2233 0.76 -1.1
2,353,502 + HP15_2233 0.76 +1.2
2,353,599 + HP15_2233 0.83 -0.0
2,353,760 + -0.1
2,353,901 + +0.4
2,353,902 + -1.7
2,353,909 - -0.3
2,353,910 - +0.6
2,354,010 - HP15_2234 0.13 -0.4
2,354,057 + HP15_2234 0.17 -0.3
2,354,065 - HP15_2234 0.18 +1.0
2,354,380 + HP15_2234 0.47 +1.3
2,354,398 + HP15_2234 0.48 -0.4
2,354,475 + HP15_2234 0.55 +0.0
2,354,563 + HP15_2234 0.63 +2.3
2,354,631 + HP15_2234 0.69 +0.0
2,354,636 + HP15_2234 0.70 +0.1
2,354,692 + HP15_2234 0.75 -0.3
2,354,738 - HP15_2234 0.79 -0.5
2,354,738 - HP15_2234 0.79 -0.1

Or see this region's nucleotide sequence