Experiment: L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2231 and HP15_2232 are separated by 99 nucleotides HP15_2232 and HP15_2233 are separated by 115 nucleotides HP15_2233 and HP15_2234 are separated by 52 nucleotides
HP15_2231: HP15_2231 - pitrilysin metallopeptidase 1, at 2,348,903 to 2,351,827
_2231
HP15_2232: HP15_2232 - conserved hypothetical protein, membrane, at 2,351,927 to 2,352,388
_2232
HP15_2233: HP15_2233 - MORN repeat protein, at 2,352,504 to 2,353,817
_2233
HP15_2234: HP15_2234 - CheY-like receiver protein, at 2,353,870 to 2,354,964
_2234
Position (kb)
2352
2353
2354 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2351.622 kb on - strand at 2351.748 kb on - strand at 2351.800 kb on - strand at 2351.905 kb on + strand at 2351.905 kb on - strand at 2351.914 kb on - strand at 2351.921 kb on - strand at 2352.056 kb on - strand, within HP15_2232 at 2352.144 kb on + strand, within HP15_2232 at 2352.165 kb on + strand, within HP15_2232 at 2352.353 kb on - strand at 2352.442 kb on - strand at 2352.562 kb on - strand at 2352.692 kb on + strand, within HP15_2233 at 2352.705 kb on - strand, within HP15_2233 at 2352.711 kb on + strand, within HP15_2233 at 2352.775 kb on + strand, within HP15_2233 at 2352.775 kb on + strand, within HP15_2233 at 2352.999 kb on - strand, within HP15_2233 at 2353.026 kb on + strand, within HP15_2233 at 2353.180 kb on + strand, within HP15_2233 at 2353.256 kb on + strand, within HP15_2233 at 2353.303 kb on - strand, within HP15_2233 at 2353.303 kb on - strand, within HP15_2233 at 2353.428 kb on + strand, within HP15_2233 at 2353.428 kb on + strand, within HP15_2233 at 2353.436 kb on - strand, within HP15_2233 at 2353.502 kb on + strand, within HP15_2233 at 2353.502 kb on + strand, within HP15_2233 at 2353.599 kb on + strand, within HP15_2233 at 2353.760 kb on + strand at 2353.901 kb on + strand at 2353.902 kb on + strand at 2353.909 kb on - strand at 2353.910 kb on - strand at 2354.010 kb on - strand, within HP15_2234 at 2354.057 kb on + strand, within HP15_2234 at 2354.065 kb on - strand, within HP15_2234 at 2354.380 kb on + strand, within HP15_2234 at 2354.398 kb on + strand, within HP15_2234 at 2354.475 kb on + strand, within HP15_2234 at 2354.563 kb on + strand, within HP15_2234 at 2354.631 kb on + strand, within HP15_2234 at 2354.636 kb on + strand, within HP15_2234 at 2354.692 kb on + strand, within HP15_2234 at 2354.738 kb on - strand, within HP15_2234 at 2354.738 kb on - strand, within HP15_2234
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate remove 2,351,622 - -0.5 2,351,748 - -0.2 2,351,800 - +0.1 2,351,905 + +0.4 2,351,905 - +0.8 2,351,914 - +0.5 2,351,921 - -0.2 2,352,056 - HP15_2232 0.28 +0.3 2,352,144 + HP15_2232 0.47 +0.5 2,352,165 + HP15_2232 0.52 +0.8 2,352,353 - -0.3 2,352,442 - -0.1 2,352,562 - -0.2 2,352,692 + HP15_2233 0.14 -0.3 2,352,705 - HP15_2233 0.15 -0.7 2,352,711 + HP15_2233 0.16 -0.2 2,352,775 + HP15_2233 0.21 -2.1 2,352,775 + HP15_2233 0.21 +0.5 2,352,999 - HP15_2233 0.38 -0.6 2,353,026 + HP15_2233 0.40 +0.0 2,353,180 + HP15_2233 0.51 -0.0 2,353,256 + HP15_2233 0.57 -0.2 2,353,303 - HP15_2233 0.61 -0.7 2,353,303 - HP15_2233 0.61 -0.0 2,353,428 + HP15_2233 0.70 -0.2 2,353,428 + HP15_2233 0.70 -0.0 2,353,436 - HP15_2233 0.71 -0.0 2,353,502 + HP15_2233 0.76 -1.1 2,353,502 + HP15_2233 0.76 +1.2 2,353,599 + HP15_2233 0.83 -0.0 2,353,760 + -0.1 2,353,901 + +0.4 2,353,902 + -1.7 2,353,909 - -0.3 2,353,910 - +0.6 2,354,010 - HP15_2234 0.13 -0.4 2,354,057 + HP15_2234 0.17 -0.3 2,354,065 - HP15_2234 0.18 +1.0 2,354,380 + HP15_2234 0.47 +1.3 2,354,398 + HP15_2234 0.48 -0.4 2,354,475 + HP15_2234 0.55 +0.0 2,354,563 + HP15_2234 0.63 +2.3 2,354,631 + HP15_2234 0.69 +0.0 2,354,636 + HP15_2234 0.70 +0.1 2,354,692 + HP15_2234 0.75 -0.3 2,354,738 - HP15_2234 0.79 -0.5 2,354,738 - HP15_2234 0.79 -0.1
Or see this region's nucleotide sequence