Strain Fitness in Shewanella amazonensis SB2B around Sama_3642

Experiment: D-Cellobiose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_3641 and Sama_3642 are separated by 179 nucleotidesSama_3642 and atpC are separated by 136 nucleotidesatpC and Sama_3644 are separated by 35 nucleotides Sama_3641: Sama_3641 - TonB-dependent receptor, putative (RefSeq), at 4,290,466 to 4,292,559 _3641 Sama_3642: Sama_3642 - UDP-N-acetylglucosamine diphosphorylase (RefSeq), at 4,292,739 to 4,294,103 _3642 Sama_3643: atpC - F0F1 ATP synthase subunit epsilon (RefSeq), at 4,294,240 to 4,294,665 atpC Sama_3644: Sama_3644 - F0F1 ATP synthase subunit beta (RefSeq), at 4,294,701 to 4,296,089 _3644 Position (kb) 4292 4293 4294 4295Strain fitness (log2 ratio) -2 -1 0 1 2at 4291.777 kb on + strand, within Sama_3641at 4291.777 kb on + strand, within Sama_3641at 4291.777 kb on + strand, within Sama_3641at 4291.778 kb on - strand, within Sama_3641at 4291.778 kb on - strand, within Sama_3641at 4291.794 kb on + strand, within Sama_3641at 4291.794 kb on + strand, within Sama_3641at 4291.794 kb on + strand, within Sama_3641at 4291.795 kb on - strand, within Sama_3641at 4291.795 kb on - strand, within Sama_3641at 4291.811 kb on + strand, within Sama_3641at 4291.811 kb on + strand, within Sama_3641at 4291.811 kb on + strand, within Sama_3641at 4291.812 kb on - strand, within Sama_3641at 4291.816 kb on + strand, within Sama_3641at 4291.816 kb on + strand, within Sama_3641at 4291.817 kb on - strand, within Sama_3641at 4291.842 kb on + strand, within Sama_3641at 4291.842 kb on + strand, within Sama_3641at 4291.842 kb on + strand, within Sama_3641at 4291.842 kb on + strand, within Sama_3641at 4291.842 kb on + strand, within Sama_3641at 4291.842 kb on + strand, within Sama_3641at 4291.842 kb on + strand, within Sama_3641at 4291.843 kb on - strand, within Sama_3641at 4291.843 kb on - strand, within Sama_3641at 4291.843 kb on - strand, within Sama_3641at 4291.843 kb on - strand, within Sama_3641at 4291.843 kb on - strand, within Sama_3641at 4291.843 kb on - strand, within Sama_3641at 4291.847 kb on + strand, within Sama_3641at 4291.848 kb on - strand, within Sama_3641at 4291.848 kb on - strand, within Sama_3641at 4291.848 kb on - strand, within Sama_3641at 4291.848 kb on - strand, within Sama_3641at 4291.848 kb on - strand, within Sama_3641at 4291.848 kb on - strand, within Sama_3641at 4291.848 kb on - strand, within Sama_3641at 4291.919 kb on + strand, within Sama_3641at 4291.919 kb on + strand, within Sama_3641at 4291.919 kb on + strand, within Sama_3641at 4291.919 kb on + strand, within Sama_3641at 4291.919 kb on + strand, within Sama_3641at 4291.919 kb on + strand, within Sama_3641at 4291.919 kb on + strand, within Sama_3641at 4291.919 kb on + strand, within Sama_3641at 4291.920 kb on - strand, within Sama_3641at 4291.920 kb on - strand, within Sama_3641at 4291.920 kb on - strand, within Sama_3641at 4291.920 kb on - strand, within Sama_3641at 4291.931 kb on + strand, within Sama_3641at 4292.114 kb on + strand, within Sama_3641at 4292.114 kb on + strand, within Sama_3641at 4292.114 kb on + strand, within Sama_3641at 4292.114 kb on + strand, within Sama_3641at 4292.114 kb on + strand, within Sama_3641at 4292.114 kb on + strand, within Sama_3641at 4292.114 kb on + strand, within Sama_3641at 4292.115 kb on - strand, within Sama_3641at 4292.115 kb on - strand, within Sama_3641at 4292.115 kb on - strand, within Sama_3641at 4292.115 kb on - strand, within Sama_3641at 4292.115 kb on - strand, within Sama_3641at 4292.115 kb on - strand, within Sama_3641at 4292.115 kb on - strand, within Sama_3641at 4292.115 kb on - strand, within Sama_3641at 4292.115 kb on - strand, within Sama_3641at 4292.155 kb on + strand, within Sama_3641at 4292.155 kb on + strand, within Sama_3641at 4292.155 kb on + strand, within Sama_3641at 4292.155 kb on + strand, within Sama_3641at 4292.156 kb on - strand, within Sama_3641at 4292.156 kb on - strand, within Sama_3641at 4292.164 kb on + strand, within Sama_3641at 4292.164 kb on + strand, within Sama_3641at 4292.164 kb on + strand, within Sama_3641at 4292.164 kb on + strand, within Sama_3641at 4292.177 kb on + strand, within Sama_3641at 4292.177 kb on + strand, within Sama_3641at 4292.177 kb on + strand, within Sama_3641at 4292.177 kb on + strand, within Sama_3641at 4292.177 kb on + strand, within Sama_3641at 4292.178 kb on - strand, within Sama_3641at 4292.178 kb on - strand, within Sama_3641at 4292.178 kb on - strand, within Sama_3641at 4292.178 kb on - strand, within Sama_3641at 4292.178 kb on - strand, within Sama_3641at 4292.178 kb on - strand, within Sama_3641at 4292.178 kb on - strand, within Sama_3641at 4292.210 kb on + strand, within Sama_3641at 4292.211 kb on - strand, within Sama_3641at 4292.391 kb on + strandat 4292.392 kb on - strandat 4292.392 kb on - strandat 4292.429 kb on + strandat 4292.429 kb on + strandat 4292.429 kb on + strandat 4292.430 kb on - strandat 4292.430 kb on - strandat 4292.430 kb on - strandat 4292.430 kb on - strandat 4292.451 kb on + strandat 4292.451 kb on + strandat 4292.452 kb on - strandat 4292.563 kb on + strandat 4292.563 kb on + strandat 4292.563 kb on + strandat 4292.563 kb on + strandat 4292.564 kb on - strandat 4292.571 kb on + strandat 4292.572 kb on - strandat 4292.572 kb on - strandat 4292.583 kb on + strandat 4292.584 kb on - strandat 4292.589 kb on + strandat 4292.590 kb on - strandat 4292.590 kb on - strandat 4292.609 kb on + strandat 4292.612 kb on - strandat 4292.626 kb on - strandat 4292.652 kb on + strandat 4292.652 kb on + strandat 4292.652 kb on + strandat 4292.728 kb on + strandat 4292.740 kb on + strandat 4292.740 kb on + strandat 4292.741 kb on - strandat 4292.741 kb on - strandat 4292.741 kb on - strandat 4294.138 kb on - strandat 4294.184 kb on + strandat 4294.185 kb on - strandat 4294.197 kb on + strandat 4294.198 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose
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4,291,777 + Sama_3641 0.63 +0.1
4,291,777 + Sama_3641 0.63 -0.3
4,291,777 + Sama_3641 0.63 +0.2
4,291,778 - Sama_3641 0.63 -0.6
4,291,778 - Sama_3641 0.63 +0.8
4,291,794 + Sama_3641 0.63 -0.1
4,291,794 + Sama_3641 0.63 -1.0
4,291,794 + Sama_3641 0.63 +0.4
4,291,795 - Sama_3641 0.63 -0.1
4,291,795 - Sama_3641 0.63 +0.7
4,291,811 + Sama_3641 0.64 -1.1
4,291,811 + Sama_3641 0.64 -0.4
4,291,811 + Sama_3641 0.64 -1.9
4,291,812 - Sama_3641 0.64 -0.8
4,291,816 + Sama_3641 0.64 +0.0
4,291,816 + Sama_3641 0.64 -0.7
4,291,817 - Sama_3641 0.65 -0.4
4,291,842 + Sama_3641 0.66 -0.1
4,291,842 + Sama_3641 0.66 +0.4
4,291,842 + Sama_3641 0.66 +0.8
4,291,842 + Sama_3641 0.66 +0.4
4,291,842 + Sama_3641 0.66 +1.0
4,291,842 + Sama_3641 0.66 -0.4
4,291,842 + Sama_3641 0.66 -0.2
4,291,843 - Sama_3641 0.66 -1.2
4,291,843 - Sama_3641 0.66 -0.3
4,291,843 - Sama_3641 0.66 -0.6
4,291,843 - Sama_3641 0.66 -0.9
4,291,843 - Sama_3641 0.66 -0.3
4,291,843 - Sama_3641 0.66 -0.5
4,291,847 + Sama_3641 0.66 -0.4
4,291,848 - Sama_3641 0.66 -0.2
4,291,848 - Sama_3641 0.66 +0.2
4,291,848 - Sama_3641 0.66 +0.1
4,291,848 - Sama_3641 0.66 -0.4
4,291,848 - Sama_3641 0.66 +2.0
4,291,848 - Sama_3641 0.66 -0.7
4,291,848 - Sama_3641 0.66 -0.8
4,291,919 + Sama_3641 0.69 +2.1
4,291,919 + Sama_3641 0.69 -0.9
4,291,919 + Sama_3641 0.69 -0.7
4,291,919 + Sama_3641 0.69 +0.2
4,291,919 + Sama_3641 0.69 -0.0
4,291,919 + Sama_3641 0.69 -0.8
4,291,919 + Sama_3641 0.69 +1.2
4,291,919 + Sama_3641 0.69 -0.6
4,291,920 - Sama_3641 0.69 -0.6
4,291,920 - Sama_3641 0.69 +0.5
4,291,920 - Sama_3641 0.69 -0.2
4,291,920 - Sama_3641 0.69 -1.6
4,291,931 + Sama_3641 0.70 -0.4
4,292,114 + Sama_3641 0.79 +0.6
4,292,114 + Sama_3641 0.79 -1.4
4,292,114 + Sama_3641 0.79 -0.4
4,292,114 + Sama_3641 0.79 -0.1
4,292,114 + Sama_3641 0.79 -0.2
4,292,114 + Sama_3641 0.79 +0.3
4,292,114 + Sama_3641 0.79 +0.3
4,292,115 - Sama_3641 0.79 -0.4
4,292,115 - Sama_3641 0.79 +0.1
4,292,115 - Sama_3641 0.79 -0.5
4,292,115 - Sama_3641 0.79 -0.7
4,292,115 - Sama_3641 0.79 -0.2
4,292,115 - Sama_3641 0.79 -1.2
4,292,115 - Sama_3641 0.79 -0.3
4,292,115 - Sama_3641 0.79 -0.6
4,292,115 - Sama_3641 0.79 -0.4
4,292,155 + Sama_3641 0.81 -0.1
4,292,155 + Sama_3641 0.81 -0.9
4,292,155 + Sama_3641 0.81 -0.1
4,292,155 + Sama_3641 0.81 -0.5
4,292,156 - Sama_3641 0.81 -1.2
4,292,156 - Sama_3641 0.81 -0.2
4,292,164 + Sama_3641 0.81 -0.1
4,292,164 + Sama_3641 0.81 +0.5
4,292,164 + Sama_3641 0.81 -0.6
4,292,164 + Sama_3641 0.81 +0.1
4,292,177 + Sama_3641 0.82 +0.9
4,292,177 + Sama_3641 0.82 +0.6
4,292,177 + Sama_3641 0.82 -0.4
4,292,177 + Sama_3641 0.82 -0.8
4,292,177 + Sama_3641 0.82 -0.3
4,292,178 - Sama_3641 0.82 +0.1
4,292,178 - Sama_3641 0.82 -0.3
4,292,178 - Sama_3641 0.82 +1.0
4,292,178 - Sama_3641 0.82 -1.0
4,292,178 - Sama_3641 0.82 -0.6
4,292,178 - Sama_3641 0.82 -0.6
4,292,178 - Sama_3641 0.82 +0.8
4,292,210 + Sama_3641 0.83 +0.4
4,292,211 - Sama_3641 0.83 -1.8
4,292,391 + -0.4
4,292,392 - +0.4
4,292,392 - +0.2
4,292,429 + -1.1
4,292,429 + -0.4
4,292,429 + +0.9
4,292,430 - +0.0
4,292,430 - +0.2
4,292,430 - +0.2
4,292,430 - +1.7
4,292,451 + +0.3
4,292,451 + +1.4
4,292,452 - +2.4
4,292,563 + +0.1
4,292,563 + +0.3
4,292,563 + -0.9
4,292,563 + +0.3
4,292,564 - +0.1
4,292,571 + -0.5
4,292,572 - -0.9
4,292,572 - +0.5
4,292,583 + +0.8
4,292,584 - +0.1
4,292,589 + -0.6
4,292,590 - -1.1
4,292,590 - +0.5
4,292,609 + -0.4
4,292,612 - -0.1
4,292,626 - +0.6
4,292,652 + -0.3
4,292,652 + +1.4
4,292,652 + -0.0
4,292,728 + -0.5
4,292,740 + -0.8
4,292,740 + -0.6
4,292,741 - -0.9
4,292,741 - +0.4
4,292,741 - +1.4
4,294,138 - -1.2
4,294,184 + +0.7
4,294,185 - +0.1
4,294,197 + -0.3
4,294,198 - -0.2

Or see this region's nucleotide sequence