Strain Fitness in Shewanella amazonensis SB2B around Sama_1400

Experiment: D-Cellobiose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cellobiose
1,697,887	+		Sama_1399	0.77	+1.2
1,697,931	+		Sama_1399	0.79	+2.2
1,698,045	+		Sama_1399	0.83	+1.5
1,698,054	+		Sama_1399	0.83	+1.3
1,698,054	+		Sama_1399	0.83	+1.1
1,698,054	+		Sama_1399	0.83	+0.9
1,698,054	+		Sama_1399	0.83	+0.1
1,698,055	-		Sama_1399	0.83	+1.8
1,698,055	-		Sama_1399	0.83	-0.1
1,698,055	-		Sama_1399	0.83	+2.6
1,698,061	+		Sama_1399	0.83	+1.1
1,698,061	+		Sama_1399	0.83	+0.2
1,698,062	-		Sama_1399	0.83	+1.9
1,698,064	-		Sama_1399	0.83	+1.9
1,698,078	+		Sama_1399	0.84	+1.0
1,698,156	+		Sama_1399	0.86	+1.0
1,698,241	+		Sama_1399	0.89	+2.0
1,698,312	+				+0.5
1,698,313	-				+1.1
1,698,313	-				-0.8
1,698,356	-				+1.2
1,698,356	-				+0.3
1,698,358	+				+1.2
1,698,359	-				+1.0
1,698,538	+				+1.3
1,698,566	-				+1.6
1,698,598	+				+1.3
1,698,598	+				+1.4
1,698,599	-				+0.6
1,698,599	-				+1.5
1,698,599	-				+0.3
1,698,613	+				+1.7
1,698,625	+				+1.4
1,698,626	-				-0.2
1,698,626	-				+2.0
1,698,626	-				+1.2
1,698,626	-				+0.4
1,698,626	-				+0.6
1,698,626	-				+0.6
1,698,660	+				+1.7
1,698,660	+				+0.4
1,698,687	-				+2.0
1,698,841	+				+2.8
1,698,907	-				+10.4
1,698,907	-				+10.5
1,698,907	-				+10.3
1,698,962	-		Sama_1400	0.13	+9.5
1,698,988	+		Sama_1400	0.16	+9.8
1,698,989	-		Sama_1400	0.16	+9.9
1,698,989	-		Sama_1400	0.16	+9.6
1,698,989	-		Sama_1400	0.16	+9.4
1,698,989	-		Sama_1400	0.16	+8.6
1,698,989	-		Sama_1400	0.16	+8.8
1,698,990	+		Sama_1400	0.16	+9.8
1,698,990	+		Sama_1400	0.16	+9.4
1,698,990	+		Sama_1400	0.16	+9.5
1,698,991	-		Sama_1400	0.16	+9.6
1,698,991	-		Sama_1400	0.16	+8.2
1,698,991	-		Sama_1400	0.16	+10.9
1,699,006	+		Sama_1400	0.18	+7.5
1,699,007	-		Sama_1400	0.18	+9.4
1,699,071	-		Sama_1400	0.24	+9.9
1,699,156	-		Sama_1400	0.33	+8.7
1,699,156	-		Sama_1400	0.33	+7.8
1,699,185	+		Sama_1400	0.36	+9.8
1,699,185	+		Sama_1400	0.36	+9.3
1,699,185	+		Sama_1400	0.36	+9.4
1,699,186	-		Sama_1400	0.36	+10.0
1,699,186	-		Sama_1400	0.36	+10.0
1,699,268	-		Sama_1400	0.44	+9.2
1,699,268	-		Sama_1400	0.44	+10.1
1,699,285	+		Sama_1400	0.46	+9.2
1,699,286	-		Sama_1400	0.46	+8.9
1,699,286	-		Sama_1400	0.46	+9.4
1,699,287	+		Sama_1400	0.46	+9.1
1,699,287	+		Sama_1400	0.46	+8.2
1,699,287	+		Sama_1400	0.46	+9.1
1,699,287	+		Sama_1400	0.46	+9.3
1,699,287	+		Sama_1400	0.46	+9.1
1,699,287	+		Sama_1400	0.46	+9.5
1,699,287	+		Sama_1400	0.46	+9.9
1,699,287	+		Sama_1400	0.46	+10.2
1,699,287	+		Sama_1400	0.46	+9.8
1,699,287	+		Sama_1400	0.46	+9.1
1,699,287	+		Sama_1400	0.46	+10.0
1,699,287	+		Sama_1400	0.46	+9.5
1,699,288	-		Sama_1400	0.46	+8.5
1,699,288	-		Sama_1400	0.46	+10.3
1,699,288	-		Sama_1400	0.46	+10.3
1,699,288	-		Sama_1400	0.46	+9.8
1,699,288	-		Sama_1400	0.46	+10.2
1,699,288	-		Sama_1400	0.46	+10.2
1,699,288	-		Sama_1400	0.46	+10.1
1,699,288	-		Sama_1400	0.46	+9.4
1,699,288	-		Sama_1400	0.46	+8.4
1,699,288	-		Sama_1400	0.46	+9.9
1,699,288	-		Sama_1400	0.46	+10.1
1,699,288	-		Sama_1400	0.46	+10.1
1,699,288	-		Sama_1400	0.46	+10.7
1,699,288	-		Sama_1400	0.46	+11.6
1,699,288	-		Sama_1400	0.46	+9.9
1,699,288	-		Sama_1400	0.46	+9.4
1,699,288	-		Sama_1400	0.46	+9.8
1,699,288	-		Sama_1400	0.46	+9.9
1,699,288	-		Sama_1400	0.46	+10.1
1,699,288	-		Sama_1400	0.46	+10.0
1,699,288	-		Sama_1400	0.46	+9.8
1,699,288	-		Sama_1400	0.46	+8.0
1,699,288	-		Sama_1400	0.46	+9.5
1,699,288	-		Sama_1400	0.46	+9.6
1,699,288	-		Sama_1400	0.46	+10.2
1,699,293	-		Sama_1400	0.46	+8.0
1,699,561	+		Sama_1400	0.73	+11.0
1,699,609	-		Sama_1400	0.78	+8.8
1,699,816	-				+8.8
1,699,847	+				+8.8
1,699,848	-				+3.4
1,699,848	-				+4.1
1,699,848	-				-0.4
1,699,850	+				+8.4
1,699,850	+				+9.9
1,699,850	+				+8.6
1,699,850	+				+9.9
1,699,850	+				+7.2
1,699,851	-				+2.6
1,699,851	-				-0.1
1,699,851	-				+5.6
1,699,851	-				+4.6
1,699,851	-				+2.8
1,699,851	-				+5.5
1,699,851	-				+0.6
1,699,851	-				+2.7
1,699,851	-				+4.5
1,699,851	-				+3.1
1,699,851	-				+4.5
1,699,851	-				-1.4
1,699,851	-				+1.3
1,699,851	-				+3.2
1,699,851	-				-0.2
1,699,851	-				+0.6
1,699,851	-				+1.8
1,699,851	-				+0.2
1,699,856	+				+8.5
1,699,856	+				+8.4
1,699,856	+				+9.6
1,699,856	+				+9.5
1,699,857	-				-1.2
1,699,857	-				+1.6
1,699,857	-				+1.1
1,699,857	-				+3.2
1,699,857	-				+5.4
1,699,857	-				+2.9
1,699,857	-				+0.6
1,699,885	+				-2.1
1,699,920	+				+0.0
1,699,920	+				-1.0
1,699,920	+				-4.0
1,699,920	+				-4.1
1,699,920	+				-1.4
1,699,920	+				-2.2
1,699,920	+				-3.7
1,699,920	+				-3.8
1,699,920	+				-2.0
1,699,921	-				-1.4
1,699,921	-				-3.8
1,699,921	-				-3.3
1,699,922	+				-2.5
1,699,922	+				-3.1
1,699,923	-				-1.4
1,700,091	+		Sama_1401	0.18	-3.0
1,700,143	-		Sama_1401	0.22	-1.4
1,700,154	-		Sama_1401	0.22	-3.5
1,700,225	+		Sama_1401	0.28	-3.8
1,700,225	+		Sama_1401	0.28	-1.0
1,700,226	-		Sama_1401	0.28	-2.4
1,700,226	-		Sama_1401	0.28	-2.5
1,700,226	-		Sama_1401	0.28	-1.7
1,700,246	+		Sama_1401	0.29	-0.4
1,700,247	-		Sama_1401	0.29	-3.6
1,700,247	-		Sama_1401	0.29	-3.5
1,700,247	-		Sama_1401	0.29	-3.5
1,700,295	+		Sama_1401	0.33	-2.4
1,700,312	+		Sama_1401	0.34	-2.7
1,700,312	+		Sama_1401	0.34	-1.0
1,700,312	+		Sama_1401	0.34	-2.8
1,700,312	+		Sama_1401	0.34	-3.1
1,700,312	+		Sama_1401	0.34	-2.4
1,700,313	-		Sama_1401	0.34	-3.5
1,700,313	-		Sama_1401	0.34	-3.5
1,700,313	-		Sama_1401	0.34	-2.0
1,700,326	-		Sama_1401	0.35	-2.7
1,700,326	-		Sama_1401	0.35	-2.5
1,700,429	+		Sama_1401	0.43	-2.5
1,700,429	+		Sama_1401	0.43	-2.5
1,700,429	+		Sama_1401	0.43	-3.3
1,700,430	-		Sama_1401	0.43	-2.2
1,700,430	-		Sama_1401	0.43	-2.5
1,700,438	+		Sama_1401	0.44	-4.0
1,700,438	+		Sama_1401	0.44	-2.4
1,700,441	+		Sama_1401	0.44	-3.8
1,700,442	-		Sama_1401	0.44	-3.1
1,700,442	-		Sama_1401	0.44	-2.7
1,700,442	-		Sama_1401	0.44	-2.0
1,700,442	-		Sama_1401	0.44	-3.7
1,700,442	-		Sama_1401	0.44	-2.2
1,700,442	-		Sama_1401	0.44	-2.5
1,700,442	-		Sama_1401	0.44	-2.2
1,700,460	+		Sama_1401	0.45	-2.4
1,700,460	+		Sama_1401	0.45	-2.4
1,700,460	+		Sama_1401	0.45	-2.5
1,700,460	+		Sama_1401	0.45	-1.7
1,700,461	-		Sama_1401	0.45	-4.0
1,700,465	-		Sama_1401	0.46	-3.5
1,700,608	+		Sama_1401	0.56	-2.2
1,700,631	+		Sama_1401	0.58	-4.7
1,700,631	+		Sama_1401	0.58	-2.5
1,700,631	+		Sama_1401	0.58	-1.9
1,700,632	-		Sama_1401	0.58	-2.5
1,700,645	-		Sama_1401	0.59	-4.0
1,700,658	-		Sama_1401	0.60	-3.5
1,700,743	+		Sama_1401	0.67	-4.2
1,700,743	+		Sama_1401	0.67	-1.4
1,700,744	-		Sama_1401	0.67	-2.2
1,700,744	-		Sama_1401	0.67	-2.4
1,700,744	-		Sama_1401	0.67	-3.0
1,700,754	-		Sama_1401	0.67	-2.7
1,700,813	+		Sama_1401	0.72	-1.4
1,700,813	+		Sama_1401	0.72	-2.8
1,700,814	-		Sama_1401	0.72	-3.5
1,700,814	-		Sama_1401	0.72	+0.6
1,700,814	-		Sama_1401	0.72	-2.0
1,700,820	+		Sama_1401	0.72	-3.0
1,700,821	-		Sama_1401	0.72	-3.4