Experiment: D-Cellobiose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0592 and Sama_0593 overlap by 1 nucleotides Sama_0593 and Sama_0594 overlap by 4 nucleotides Sama_0594 and Sama_0595 are separated by 406 nucleotides
Sama_0592: Sama_0592 - smc-like chromosome partitioning protein (DUF3584) <small>(from data)</small>, at 739,679 to 743,359
_0592
Sama_0593: Sama_0593 - predicted chromosome partitioning protein (with smc-like Sama_0592) <small>(from data)</small>, at 743,359 to 744,024
_0593
Sama_0594: Sama_0594 - predicted chromosome partitioning protein (with smc-like Sama_0592) <small>(from data)</small>, at 744,021 to 745,241
_0594
Sama_0595: Sama_0595 - sodium:dicarboxylate symporter (RefSeq), at 745,648 to 746,892
_0595
Position (kb) 744
745
746 Strain fitness (log2 ratio) -2
-1
0
1
2 at 743.042 kb on - strand at 743.048 kb on + strand at 743.049 kb on - strand at 743.049 kb on - strand at 743.063 kb on - strand at 743.081 kb on - strand at 743.194 kb on + strand at 743.194 kb on + strand at 743.194 kb on + strand at 743.194 kb on + strand at 743.194 kb on + strand at 743.194 kb on + strand at 743.194 kb on + strand at 743.195 kb on - strand at 743.195 kb on - strand at 743.195 kb on - strand at 743.195 kb on - strand at 743.259 kb on - strand at 743.260 kb on + strand at 743.260 kb on + strand at 743.260 kb on + strand at 743.260 kb on + strand at 743.260 kb on + strand at 743.260 kb on + strand at 743.260 kb on + strand at 743.261 kb on - strand at 743.261 kb on - strand at 743.261 kb on - strand at 743.261 kb on - strand at 743.261 kb on - strand at 743.339 kb on - strand at 743.357 kb on + strand at 743.357 kb on + strand at 743.357 kb on + strand at 743.357 kb on + strand at 743.357 kb on + strand at 743.443 kb on - strand, within Sama_0593 at 743.505 kb on + strand, within Sama_0593 at 743.515 kb on + strand, within Sama_0593 at 743.578 kb on + strand, within Sama_0593 at 743.631 kb on + strand, within Sama_0593 at 743.631 kb on + strand, within Sama_0593 at 743.632 kb on - strand, within Sama_0593 at 743.823 kb on + strand, within Sama_0593 at 743.823 kb on + strand, within Sama_0593 at 743.823 kb on + strand, within Sama_0593 at 743.823 kb on + strand, within Sama_0593 at 743.841 kb on + strand, within Sama_0593 at 743.841 kb on + strand, within Sama_0593 at 743.841 kb on + strand, within Sama_0593 at 743.841 kb on + strand, within Sama_0593 at 743.842 kb on - strand, within Sama_0593 at 743.842 kb on - strand, within Sama_0593 at 743.881 kb on - strand, within Sama_0593 at 743.909 kb on - strand, within Sama_0593 at 743.932 kb on + strand, within Sama_0593 at 743.932 kb on + strand, within Sama_0593 at 743.932 kb on + strand, within Sama_0593 at 743.932 kb on + strand, within Sama_0593 at 743.932 kb on + strand, within Sama_0593 at 743.933 kb on - strand, within Sama_0593 at 744.020 kb on + strand at 744.020 kb on + strand at 744.021 kb on - strand at 744.099 kb on + strand at 744.099 kb on + strand at 744.099 kb on + strand at 744.100 kb on - strand at 744.100 kb on - strand at 744.199 kb on + strand, within Sama_0594 at 744.242 kb on + strand, within Sama_0594 at 744.243 kb on - strand, within Sama_0594 at 744.266 kb on + strand, within Sama_0594 at 744.277 kb on + strand, within Sama_0594 at 744.277 kb on + strand, within Sama_0594 at 744.277 kb on + strand, within Sama_0594 at 744.277 kb on + strand, within Sama_0594 at 744.277 kb on + strand, within Sama_0594 at 744.278 kb on - strand, within Sama_0594 at 744.278 kb on - strand, within Sama_0594 at 744.318 kb on + strand, within Sama_0594 at 744.318 kb on + strand, within Sama_0594 at 744.318 kb on + strand, within Sama_0594 at 744.318 kb on + strand, within Sama_0594 at 744.319 kb on - strand, within Sama_0594 at 744.319 kb on - strand, within Sama_0594 at 744.319 kb on - strand, within Sama_0594 at 744.320 kb on + strand, within Sama_0594 at 744.320 kb on + strand, within Sama_0594 at 744.320 kb on + strand, within Sama_0594 at 744.320 kb on + strand, within Sama_0594 at 744.320 kb on + strand, within Sama_0594 at 744.320 kb on + strand, within Sama_0594 at 744.320 kb on + strand, within Sama_0594 at 744.320 kb on + strand, within Sama_0594 at 744.321 kb on - strand, within Sama_0594 at 744.321 kb on - strand, within Sama_0594 at 744.321 kb on - strand, within Sama_0594 at 744.345 kb on + strand, within Sama_0594 at 744.345 kb on + strand, within Sama_0594 at 744.345 kb on + strand, within Sama_0594 at 744.346 kb on - strand, within Sama_0594 at 744.363 kb on + strand, within Sama_0594 at 744.364 kb on - strand, within Sama_0594 at 744.390 kb on + strand, within Sama_0594 at 744.391 kb on - strand, within Sama_0594 at 744.391 kb on - strand, within Sama_0594 at 744.391 kb on - strand, within Sama_0594 at 744.391 kb on - strand, within Sama_0594 at 744.443 kb on + strand, within Sama_0594 at 744.460 kb on - strand, within Sama_0594 at 744.578 kb on + strand, within Sama_0594 at 744.604 kb on + strand, within Sama_0594 at 744.605 kb on - strand, within Sama_0594 at 744.635 kb on + strand, within Sama_0594 at 744.635 kb on + strand, within Sama_0594 at 744.636 kb on - strand, within Sama_0594 at 744.636 kb on - strand, within Sama_0594 at 744.636 kb on - strand, within Sama_0594 at 744.636 kb on - strand, within Sama_0594 at 744.636 kb on - strand, within Sama_0594 at 744.636 kb on - strand, within Sama_0594 at 744.707 kb on + strand, within Sama_0594 at 744.735 kb on + strand, within Sama_0594 at 744.736 kb on - strand, within Sama_0594 at 744.743 kb on + strand, within Sama_0594 at 744.743 kb on + strand, within Sama_0594 at 744.743 kb on + strand, within Sama_0594 at 744.743 kb on + strand, within Sama_0594 at 744.744 kb on - strand, within Sama_0594 at 744.744 kb on - strand, within Sama_0594 at 744.744 kb on - strand, within Sama_0594 at 744.744 kb on - strand, within Sama_0594 at 744.744 kb on - strand, within Sama_0594 at 744.744 kb on - strand, within Sama_0594 at 744.756 kb on + strand, within Sama_0594 at 744.756 kb on + strand, within Sama_0594 at 744.757 kb on - strand, within Sama_0594 at 744.803 kb on + strand, within Sama_0594 at 744.849 kb on - strand, within Sama_0594 at 744.916 kb on + strand, within Sama_0594 at 744.916 kb on + strand, within Sama_0594 at 744.916 kb on + strand, within Sama_0594 at 744.916 kb on + strand, within Sama_0594 at 744.917 kb on - strand, within Sama_0594 at 744.917 kb on - strand, within Sama_0594 at 744.978 kb on - strand, within Sama_0594 at 745.014 kb on + strand, within Sama_0594 at 745.014 kb on + strand, within Sama_0594 at 745.015 kb on - strand, within Sama_0594 at 745.015 kb on - strand, within Sama_0594 at 745.015 kb on - strand, within Sama_0594 at 745.030 kb on + strand, within Sama_0594 at 745.030 kb on + strand, within Sama_0594 at 745.030 kb on + strand, within Sama_0594 at 745.030 kb on + strand, within Sama_0594 at 745.031 kb on - strand, within Sama_0594 at 745.031 kb on - strand, within Sama_0594 at 745.031 kb on - strand, within Sama_0594 at 745.031 kb on - strand, within Sama_0594 at 745.031 kb on - strand, within Sama_0594 at 745.062 kb on + strand, within Sama_0594 at 745.063 kb on - strand, within Sama_0594 at 745.063 kb on - strand, within Sama_0594 at 745.148 kb on + strand at 745.148 kb on + strand at 745.148 kb on + strand at 745.148 kb on + strand at 745.194 kb on + strand at 745.194 kb on + strand at 745.194 kb on + strand at 745.194 kb on + strand at 745.194 kb on + strand at 745.194 kb on + strand at 745.194 kb on + strand at 745.195 kb on - strand at 745.196 kb on + strand at 745.196 kb on + strand at 745.281 kb on + strand at 745.290 kb on + strand at 745.290 kb on + strand at 745.334 kb on + strand at 745.334 kb on + strand at 745.334 kb on + strand at 745.334 kb on + strand at 745.334 kb on + strand at 745.334 kb on + strand at 745.334 kb on + strand at 745.334 kb on + strand at 745.334 kb on + strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.338 kb on + strand at 745.492 kb on + strand at 745.626 kb on + strand at 745.627 kb on - strand at 745.627 kb on - strand at 745.647 kb on + strand at 745.647 kb on + strand at 745.647 kb on + strand at 745.647 kb on + strand at 745.647 kb on + strand at 745.647 kb on + strand at 745.647 kb on + strand at 745.648 kb on - strand at 745.648 kb on - strand at 745.648 kb on - strand at 745.648 kb on - strand at 745.648 kb on - strand at 745.689 kb on + strand at 745.720 kb on + strand at 745.720 kb on + strand at 745.720 kb on + strand at 745.720 kb on + strand at 745.720 kb on + strand at 745.720 kb on + strand at 745.734 kb on + strand at 745.734 kb on + strand at 745.860 kb on + strand, within Sama_0595 at 745.909 kb on + strand, within Sama_0595 at 745.909 kb on + strand, within Sama_0595 at 745.910 kb on - strand, within Sama_0595 at 745.920 kb on + strand, within Sama_0595 at 745.920 kb on + strand, within Sama_0595 at 745.921 kb on - strand, within Sama_0595 at 745.932 kb on + strand, within Sama_0595 at 745.932 kb on + strand, within Sama_0595 at 745.932 kb on + strand, within Sama_0595 at 745.932 kb on + strand, within Sama_0595 at 745.932 kb on + strand, within Sama_0595 at 745.933 kb on - strand, within Sama_0595 at 745.933 kb on - strand, within Sama_0595 at 745.934 kb on + strand, within Sama_0595 at 745.935 kb on - strand, within Sama_0595 at 746.013 kb on + strand, within Sama_0595 at 746.051 kb on + strand, within Sama_0595 at 746.052 kb on - strand, within Sama_0595 at 746.057 kb on + strand, within Sama_0595 at 746.057 kb on + strand, within Sama_0595 at 746.057 kb on + strand, within Sama_0595 at 746.057 kb on + strand, within Sama_0595 at 746.057 kb on + strand, within Sama_0595 at 746.057 kb on + strand, within Sama_0595 at 746.057 kb on + strand, within Sama_0595 at 746.057 kb on + strand, within Sama_0595 at 746.057 kb on + strand, within Sama_0595 at 746.057 kb on + strand, within Sama_0595 at 746.058 kb on - strand, within Sama_0595 at 746.058 kb on - strand, within Sama_0595 at 746.058 kb on - strand, within Sama_0595 at 746.058 kb on - strand, within Sama_0595 at 746.058 kb on - strand, within Sama_0595 at 746.058 kb on - strand, within Sama_0595 at 746.058 kb on - strand, within Sama_0595 at 746.058 kb on - strand, within Sama_0595 at 746.085 kb on + strand, within Sama_0595 at 746.085 kb on + strand, within Sama_0595 at 746.085 kb on + strand, within Sama_0595 at 746.085 kb on + strand, within Sama_0595 at 746.086 kb on - strand, within Sama_0595 at 746.086 kb on - strand, within Sama_0595 at 746.086 kb on - strand, within Sama_0595 at 746.097 kb on + strand, within Sama_0595 at 746.097 kb on + strand, within Sama_0595 at 746.097 kb on + strand, within Sama_0595 at 746.098 kb on - strand, within Sama_0595 at 746.115 kb on + strand, within Sama_0595 at 746.116 kb on - strand, within Sama_0595 at 746.175 kb on - strand, within Sama_0595 at 746.175 kb on - strand, within Sama_0595 at 746.196 kb on + strand, within Sama_0595
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose remove 743,042 - +0.6 743,048 + +1.9 743,049 - +0.8 743,049 - -0.6 743,063 - +0.2 743,081 - +0.6 743,194 + +0.1 743,194 + +1.3 743,194 + +0.4 743,194 + -0.9 743,194 + +0.5 743,194 + +0.3 743,194 + -0.2 743,195 - +0.5 743,195 - -1.6 743,195 - -0.5 743,195 - -1.0 743,259 - +0.9 743,260 + +0.2 743,260 + +1.0 743,260 + +1.5 743,260 + -0.2 743,260 + +0.4 743,260 + +0.0 743,260 + +0.5 743,261 - -1.5 743,261 - +0.4 743,261 - +0.4 743,261 - +0.1 743,261 - +1.4 743,339 - -0.0 743,357 + +0.4 743,357 + +1.1 743,357 + +0.5 743,357 + +0.1 743,357 + +1.1 743,443 - Sama_0593 0.13 +0.5 743,505 + Sama_0593 0.22 -0.2 743,515 + Sama_0593 0.23 -0.4 743,578 + Sama_0593 0.33 -0.3 743,631 + Sama_0593 0.41 -1.3 743,631 + Sama_0593 0.41 +0.2 743,632 - Sama_0593 0.41 +0.2 743,823 + Sama_0593 0.70 -1.2 743,823 + Sama_0593 0.70 -1.6 743,823 + Sama_0593 0.70 -0.0 743,823 + Sama_0593 0.70 -0.4 743,841 + Sama_0593 0.72 -0.6 743,841 + Sama_0593 0.72 -1.5 743,841 + Sama_0593 0.72 -1.3 743,841 + Sama_0593 0.72 -0.9 743,842 - Sama_0593 0.73 -1.5 743,842 - Sama_0593 0.73 -0.3 743,881 - Sama_0593 0.78 -0.3 743,909 - Sama_0593 0.83 -0.0 743,932 + Sama_0593 0.86 -1.2 743,932 + Sama_0593 0.86 +0.5 743,932 + Sama_0593 0.86 -0.5 743,932 + Sama_0593 0.86 -0.5 743,932 + Sama_0593 0.86 -0.6 743,933 - Sama_0593 0.86 -0.6 744,020 + +0.2 744,020 + -0.9 744,021 - -0.4 744,099 + -0.5 744,099 + -1.5 744,099 + +0.5 744,100 - +1.1 744,100 - -0.2 744,199 + Sama_0594 0.15 +0.7 744,242 + Sama_0594 0.18 +0.5 744,243 - Sama_0594 0.18 +0.8 744,266 + Sama_0594 0.20 +0.4 744,277 + Sama_0594 0.21 +0.2 744,277 + Sama_0594 0.21 +0.7 744,277 + Sama_0594 0.21 -0.8 744,277 + Sama_0594 0.21 +0.8 744,277 + Sama_0594 0.21 +0.3 744,278 - Sama_0594 0.21 -0.9 744,278 - Sama_0594 0.21 -0.9 744,318 + Sama_0594 0.24 -1.6 744,318 + Sama_0594 0.24 -1.2 744,318 + Sama_0594 0.24 +0.1 744,318 + Sama_0594 0.24 +0.7 744,319 - Sama_0594 0.24 -1.2 744,319 - Sama_0594 0.24 -0.1 744,319 - Sama_0594 0.24 -1.9 744,320 + Sama_0594 0.24 -0.0 744,320 + Sama_0594 0.24 +0.3 744,320 + Sama_0594 0.24 +1.7 744,320 + Sama_0594 0.24 -1.2 744,320 + Sama_0594 0.24 +1.2 744,320 + Sama_0594 0.24 -0.3 744,320 + Sama_0594 0.24 -0.9 744,320 + Sama_0594 0.24 +1.3 744,321 - Sama_0594 0.25 +0.3 744,321 - Sama_0594 0.25 +0.8 744,321 - Sama_0594 0.25 -1.6 744,345 + Sama_0594 0.27 +0.3 744,345 + Sama_0594 0.27 -0.9 744,345 + Sama_0594 0.27 +0.8 744,346 - Sama_0594 0.27 -0.6 744,363 + Sama_0594 0.28 +0.4 744,364 - Sama_0594 0.28 -0.4 744,390 + Sama_0594 0.30 -0.8 744,391 - Sama_0594 0.30 +0.1 744,391 - Sama_0594 0.30 -0.5 744,391 - Sama_0594 0.30 +0.9 744,391 - Sama_0594 0.30 -0.4 744,443 + Sama_0594 0.35 +0.1 744,460 - Sama_0594 0.36 +0.5 744,578 + Sama_0594 0.46 +0.8 744,604 + Sama_0594 0.48 -1.1 744,605 - Sama_0594 0.48 +1.4 744,635 + Sama_0594 0.50 -2.6 744,635 + Sama_0594 0.50 +0.6 744,636 - Sama_0594 0.50 +1.4 744,636 - Sama_0594 0.50 -1.3 744,636 - Sama_0594 0.50 -0.2 744,636 - Sama_0594 0.50 +0.6 744,636 - Sama_0594 0.50 -0.4 744,636 - Sama_0594 0.50 +0.6 744,707 + Sama_0594 0.56 +0.6 744,735 + Sama_0594 0.58 +0.2 744,736 - Sama_0594 0.59 +0.7 744,743 + Sama_0594 0.59 +0.9 744,743 + Sama_0594 0.59 -0.7 744,743 + Sama_0594 0.59 +1.5 744,743 + Sama_0594 0.59 +0.1 744,744 - Sama_0594 0.59 -2.2 744,744 - Sama_0594 0.59 -0.8 744,744 - Sama_0594 0.59 -1.0 744,744 - Sama_0594 0.59 -1.0 744,744 - Sama_0594 0.59 +1.1 744,744 - Sama_0594 0.59 -0.7 744,756 + Sama_0594 0.60 -0.8 744,756 + Sama_0594 0.60 +0.3 744,757 - Sama_0594 0.60 -2.1 744,803 + Sama_0594 0.64 +0.1 744,849 - Sama_0594 0.68 +0.4 744,916 + Sama_0594 0.73 +1.0 744,916 + Sama_0594 0.73 +0.1 744,916 + Sama_0594 0.73 -0.6 744,916 + Sama_0594 0.73 +1.7 744,917 - Sama_0594 0.73 -0.9 744,917 - Sama_0594 0.73 +0.1 744,978 - Sama_0594 0.78 -0.9 745,014 + Sama_0594 0.81 +1.4 745,014 + Sama_0594 0.81 -1.0 745,015 - Sama_0594 0.81 -0.9 745,015 - Sama_0594 0.81 -1.7 745,015 - Sama_0594 0.81 +0.8 745,030 + Sama_0594 0.83 -0.0 745,030 + Sama_0594 0.83 -0.8 745,030 + Sama_0594 0.83 +0.3 745,030 + Sama_0594 0.83 -0.5 745,031 - Sama_0594 0.83 +0.2 745,031 - Sama_0594 0.83 -1.4 745,031 - Sama_0594 0.83 +0.6 745,031 - Sama_0594 0.83 +0.4 745,031 - Sama_0594 0.83 -0.3 745,062 + Sama_0594 0.85 +0.5 745,063 - Sama_0594 0.85 +0.1 745,063 - Sama_0594 0.85 -1.9 745,148 + -0.1 745,148 + +0.5 745,148 + +0.5 745,148 + -0.5 745,194 + -0.5 745,194 + +0.1 745,194 + -0.7 745,194 + -0.6 745,194 + -0.3 745,194 + +0.2 745,194 + -1.2 745,195 - -1.7 745,196 + +0.1 745,196 + -1.0 745,281 + +0.3 745,290 + +0.1 745,290 + +1.7 745,334 + -0.6 745,334 + -0.8 745,334 + -1.9 745,334 + +0.1 745,334 + +0.1 745,334 + +0.5 745,334 + +0.0 745,334 + +0.3 745,334 + +2.1 745,335 - -1.2 745,335 - +0.9 745,335 - +0.8 745,335 - +0.5 745,335 - -0.5 745,335 - +0.2 745,335 - -1.6 745,335 - -0.8 745,335 - -0.5 745,335 - +0.1 745,335 - +0.9 745,335 - -0.5 745,338 + -0.6 745,492 + -0.4 745,626 + -0.9 745,627 - +0.7 745,627 - +0.5 745,647 + +0.7 745,647 + -0.9 745,647 + +0.1 745,647 + -0.2 745,647 + -1.9 745,647 + +1.7 745,647 + +0.3 745,648 - -0.2 745,648 - -0.5 745,648 - -0.1 745,648 - +1.1 745,648 - -0.5 745,689 + +0.1 745,720 + -0.4 745,720 + -0.5 745,720 + -2.4 745,720 + -1.4 745,720 + -0.3 745,720 + -0.3 745,734 + -0.1 745,734 + -1.1 745,860 + Sama_0595 0.17 -1.5 745,909 + Sama_0595 0.21 -0.6 745,909 + Sama_0595 0.21 +0.1 745,910 - Sama_0595 0.21 +0.9 745,920 + Sama_0595 0.22 +0.5 745,920 + Sama_0595 0.22 +0.9 745,921 - Sama_0595 0.22 +0.3 745,932 + Sama_0595 0.23 -0.7 745,932 + Sama_0595 0.23 +0.6 745,932 + Sama_0595 0.23 +0.3 745,932 + Sama_0595 0.23 -0.7 745,932 + Sama_0595 0.23 -0.2 745,933 - Sama_0595 0.23 +0.7 745,933 - Sama_0595 0.23 -0.0 745,934 + Sama_0595 0.23 -0.0 745,935 - Sama_0595 0.23 -0.5 746,013 + Sama_0595 0.29 -0.1 746,051 + Sama_0595 0.32 +0.5 746,052 - Sama_0595 0.32 -0.8 746,057 + Sama_0595 0.33 +0.5 746,057 + Sama_0595 0.33 -0.5 746,057 + Sama_0595 0.33 -1.0 746,057 + Sama_0595 0.33 -0.3 746,057 + Sama_0595 0.33 -0.4 746,057 + Sama_0595 0.33 +0.3 746,057 + Sama_0595 0.33 +0.5 746,057 + Sama_0595 0.33 +1.1 746,057 + Sama_0595 0.33 +0.6 746,057 + Sama_0595 0.33 -0.6 746,058 - Sama_0595 0.33 -0.5 746,058 - Sama_0595 0.33 +0.9 746,058 - Sama_0595 0.33 +1.7 746,058 - Sama_0595 0.33 +0.7 746,058 - Sama_0595 0.33 -0.3 746,058 - Sama_0595 0.33 +0.4 746,058 - Sama_0595 0.33 +0.3 746,058 - Sama_0595 0.33 +0.0 746,085 + Sama_0595 0.35 -0.5 746,085 + Sama_0595 0.35 +0.5 746,085 + Sama_0595 0.35 -0.1 746,085 + Sama_0595 0.35 -0.2 746,086 - Sama_0595 0.35 +0.8 746,086 - Sama_0595 0.35 +0.1 746,086 - Sama_0595 0.35 -0.2 746,097 + Sama_0595 0.36 -0.0 746,097 + Sama_0595 0.36 +0.4 746,097 + Sama_0595 0.36 -1.0 746,098 - Sama_0595 0.36 -1.3 746,115 + Sama_0595 0.38 +0.7 746,116 - Sama_0595 0.38 +0.3 746,175 - Sama_0595 0.42 +0.9 746,175 - Sama_0595 0.42 +0.5 746,196 + Sama_0595 0.44 -1.5
Or see this region's nucleotide sequence