Experiment: D-Cellobiose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0485 and Sama_0486 are separated by 184 nucleotides Sama_0486 and Sama_0487 are separated by 80 nucleotides Sama_0487 and Sama_0488 are separated by 280 nucleotides
Sama_0485: Sama_0485 - MiaB-like putative RNA modifying enzyme YliG (RefSeq), at 595,731 to 597,212
_0485
Sama_0486: Sama_0486 - hypothetical protein (RefSeq), at 597,397 to 598,104
_0486
Sama_0487: Sama_0487 - N-acetyltransferase (RefSeq), at 598,185 to 598,682
_0487
Sama_0488: Sama_0488 - hypothetical protein (RefSeq), at 598,963 to 599,883
_0488
Position (kb) 597
598
599 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 596.473 kb on + strand, within Sama_0485 at 596.641 kb on + strand, within Sama_0485 at 596.642 kb on - strand, within Sama_0485 at 596.642 kb on - strand, within Sama_0485 at 596.647 kb on + strand, within Sama_0485 at 596.648 kb on - strand, within Sama_0485 at 596.648 kb on - strand, within Sama_0485 at 596.648 kb on - strand, within Sama_0485 at 596.667 kb on + strand, within Sama_0485 at 596.667 kb on + strand, within Sama_0485 at 596.668 kb on - strand, within Sama_0485 at 596.668 kb on - strand, within Sama_0485 at 596.722 kb on + strand, within Sama_0485 at 596.722 kb on + strand, within Sama_0485 at 596.722 kb on + strand, within Sama_0485 at 596.722 kb on + strand, within Sama_0485 at 596.722 kb on + strand, within Sama_0485 at 596.722 kb on + strand, within Sama_0485 at 596.723 kb on - strand, within Sama_0485 at 596.723 kb on - strand, within Sama_0485 at 596.723 kb on - strand, within Sama_0485 at 596.723 kb on - strand, within Sama_0485 at 596.723 kb on - strand, within Sama_0485 at 596.723 kb on - strand, within Sama_0485 at 596.723 kb on - strand, within Sama_0485 at 596.723 kb on - strand, within Sama_0485 at 596.723 kb on - strand, within Sama_0485 at 596.752 kb on + strand, within Sama_0485 at 596.752 kb on + strand, within Sama_0485 at 596.752 kb on + strand, within Sama_0485 at 596.752 kb on + strand, within Sama_0485 at 596.752 kb on + strand, within Sama_0485 at 596.752 kb on + strand, within Sama_0485 at 596.752 kb on + strand, within Sama_0485 at 596.752 kb on + strand, within Sama_0485 at 596.753 kb on - strand, within Sama_0485 at 596.753 kb on - strand, within Sama_0485 at 596.753 kb on - strand, within Sama_0485 at 596.753 kb on - strand, within Sama_0485 at 596.753 kb on - strand, within Sama_0485 at 596.753 kb on - strand, within Sama_0485 at 596.753 kb on - strand, within Sama_0485 at 596.753 kb on - strand, within Sama_0485 at 596.836 kb on - strand, within Sama_0485 at 596.838 kb on + strand, within Sama_0485 at 596.838 kb on + strand, within Sama_0485 at 596.839 kb on - strand, within Sama_0485 at 596.839 kb on - strand, within Sama_0485 at 596.919 kb on + strand, within Sama_0485 at 596.919 kb on + strand, within Sama_0485 at 596.920 kb on - strand, within Sama_0485 at 596.920 kb on - strand, within Sama_0485 at 596.920 kb on - strand, within Sama_0485 at 596.920 kb on - strand, within Sama_0485 at 596.944 kb on + strand, within Sama_0485 at 596.944 kb on + strand, within Sama_0485 at 596.944 kb on + strand, within Sama_0485 at 596.944 kb on + strand, within Sama_0485 at 596.944 kb on + strand, within Sama_0485 at 596.945 kb on - strand, within Sama_0485 at 596.945 kb on - strand, within Sama_0485 at 596.945 kb on - strand, within Sama_0485 at 596.945 kb on - strand, within Sama_0485 at 596.955 kb on + strand, within Sama_0485 at 596.972 kb on + strand, within Sama_0485 at 597.117 kb on - strand at 597.117 kb on - strand at 597.253 kb on - strand at 597.274 kb on + strand at 597.274 kb on + strand at 597.274 kb on + strand at 597.350 kb on + strand at 597.362 kb on - strand at 597.362 kb on - strand at 597.555 kb on - strand, within Sama_0486 at 597.555 kb on - strand, within Sama_0486 at 597.577 kb on + strand, within Sama_0486 at 597.581 kb on + strand, within Sama_0486 at 597.581 kb on + strand, within Sama_0486 at 597.581 kb on + strand, within Sama_0486 at 597.581 kb on + strand, within Sama_0486 at 597.581 kb on + strand, within Sama_0486 at 597.581 kb on + strand, within Sama_0486 at 597.582 kb on - strand, within Sama_0486 at 597.582 kb on - strand, within Sama_0486 at 597.582 kb on - strand, within Sama_0486 at 597.582 kb on - strand, within Sama_0486 at 597.582 kb on - strand, within Sama_0486 at 597.582 kb on - strand, within Sama_0486 at 597.615 kb on + strand, within Sama_0486 at 597.641 kb on + strand, within Sama_0486 at 597.641 kb on + strand, within Sama_0486 at 597.641 kb on + strand, within Sama_0486 at 597.642 kb on - strand, within Sama_0486 at 597.688 kb on + strand, within Sama_0486 at 597.688 kb on + strand, within Sama_0486 at 597.688 kb on + strand, within Sama_0486 at 597.689 kb on - strand, within Sama_0486 at 597.689 kb on - strand, within Sama_0486 at 597.694 kb on + strand, within Sama_0486 at 597.695 kb on - strand, within Sama_0486 at 597.722 kb on + strand, within Sama_0486 at 597.723 kb on - strand, within Sama_0486 at 597.723 kb on - strand, within Sama_0486 at 597.727 kb on + strand, within Sama_0486 at 597.727 kb on + strand, within Sama_0486 at 597.728 kb on - strand, within Sama_0486 at 597.756 kb on + strand, within Sama_0486 at 597.756 kb on + strand, within Sama_0486 at 597.785 kb on + strand, within Sama_0486 at 597.785 kb on + strand, within Sama_0486 at 597.785 kb on + strand, within Sama_0486 at 597.785 kb on + strand, within Sama_0486 at 597.785 kb on + strand, within Sama_0486 at 597.786 kb on - strand, within Sama_0486 at 597.786 kb on - strand, within Sama_0486 at 597.786 kb on - strand, within Sama_0486 at 597.829 kb on - strand, within Sama_0486 at 597.957 kb on + strand, within Sama_0486 at 597.958 kb on - strand, within Sama_0486 at 597.958 kb on - strand, within Sama_0486 at 597.965 kb on - strand, within Sama_0486 at 597.967 kb on + strand, within Sama_0486 at 597.967 kb on + strand, within Sama_0486 at 597.967 kb on + strand, within Sama_0486 at 597.968 kb on - strand, within Sama_0486 at 597.997 kb on + strand, within Sama_0486 at 597.997 kb on + strand, within Sama_0486 at 597.997 kb on + strand, within Sama_0486 at 597.997 kb on + strand, within Sama_0486 at 597.997 kb on + strand, within Sama_0486 at 597.997 kb on + strand, within Sama_0486 at 597.997 kb on + strand, within Sama_0486 at 597.997 kb on + strand, within Sama_0486 at 597.998 kb on - strand, within Sama_0486 at 597.998 kb on - strand, within Sama_0486 at 597.998 kb on - strand, within Sama_0486 at 597.998 kb on - strand, within Sama_0486 at 597.998 kb on - strand, within Sama_0486 at 597.998 kb on - strand, within Sama_0486 at 597.998 kb on - strand, within Sama_0486 at 597.998 kb on - strand, within Sama_0486 at 597.998 kb on - strand, within Sama_0486 at 597.998 kb on - strand, within Sama_0486 at 597.999 kb on + strand, within Sama_0486 at 597.999 kb on + strand, within Sama_0486 at 597.999 kb on + strand, within Sama_0486 at 597.999 kb on + strand, within Sama_0486 at 597.999 kb on + strand, within Sama_0486 at 598.042 kb on + strand at 598.042 kb on + strand at 598.042 kb on + strand at 598.042 kb on + strand at 598.042 kb on + strand at 598.043 kb on - strand at 598.043 kb on - strand at 598.043 kb on - strand at 598.056 kb on + strand at 598.059 kb on + strand at 598.060 kb on - strand at 598.060 kb on - strand at 598.072 kb on - strand at 598.087 kb on + strand at 598.127 kb on + strand at 598.128 kb on - strand at 598.166 kb on + strand at 598.166 kb on + strand at 598.166 kb on + strand at 598.173 kb on + strand at 598.174 kb on - strand at 598.174 kb on - strand at 598.187 kb on - strand at 598.194 kb on + strand at 598.195 kb on - strand at 598.195 kb on - strand at 598.195 kb on - strand at 598.195 kb on - strand at 598.207 kb on + strand at 598.208 kb on - strand at 598.208 kb on - strand at 598.208 kb on - strand at 598.208 kb on - strand at 598.240 kb on + strand, within Sama_0487 at 598.240 kb on + strand, within Sama_0487 at 598.240 kb on + strand, within Sama_0487 at 598.241 kb on - strand, within Sama_0487 at 598.254 kb on + strand, within Sama_0487 at 598.254 kb on + strand, within Sama_0487 at 598.255 kb on - strand, within Sama_0487 at 598.311 kb on - strand, within Sama_0487 at 598.320 kb on + strand, within Sama_0487 at 598.320 kb on + strand, within Sama_0487 at 598.320 kb on + strand, within Sama_0487 at 598.320 kb on + strand, within Sama_0487 at 598.320 kb on + strand, within Sama_0487 at 598.320 kb on + strand, within Sama_0487 at 598.321 kb on - strand, within Sama_0487 at 598.321 kb on - strand, within Sama_0487 at 598.321 kb on - strand, within Sama_0487 at 598.321 kb on - strand, within Sama_0487 at 598.321 kb on - strand, within Sama_0487 at 598.321 kb on - strand, within Sama_0487 at 598.321 kb on - strand, within Sama_0487 at 598.321 kb on - strand, within Sama_0487 at 598.321 kb on - strand, within Sama_0487 at 598.321 kb on - strand, within Sama_0487 at 598.322 kb on + strand, within Sama_0487 at 598.367 kb on + strand, within Sama_0487 at 598.367 kb on + strand, within Sama_0487 at 598.367 kb on + strand, within Sama_0487 at 598.367 kb on + strand, within Sama_0487 at 598.367 kb on + strand, within Sama_0487 at 598.368 kb on - strand, within Sama_0487 at 598.368 kb on - strand, within Sama_0487 at 598.423 kb on + strand, within Sama_0487 at 598.423 kb on + strand, within Sama_0487 at 598.423 kb on + strand, within Sama_0487 at 598.423 kb on + strand, within Sama_0487 at 598.423 kb on + strand, within Sama_0487 at 598.423 kb on + strand, within Sama_0487 at 598.423 kb on + strand, within Sama_0487 at 598.424 kb on - strand, within Sama_0487 at 598.424 kb on - strand, within Sama_0487 at 598.424 kb on - strand, within Sama_0487 at 598.424 kb on - strand, within Sama_0487 at 598.444 kb on + strand, within Sama_0487 at 598.445 kb on - strand, within Sama_0487 at 598.477 kb on + strand, within Sama_0487 at 598.477 kb on + strand, within Sama_0487 at 598.477 kb on + strand, within Sama_0487 at 598.477 kb on + strand, within Sama_0487 at 598.478 kb on - strand, within Sama_0487 at 598.478 kb on - strand, within Sama_0487 at 598.478 kb on - strand, within Sama_0487 at 598.478 kb on - strand, within Sama_0487 at 598.478 kb on - strand, within Sama_0487 at 598.531 kb on + strand, within Sama_0487 at 598.531 kb on + strand, within Sama_0487 at 598.531 kb on + strand, within Sama_0487 at 598.531 kb on + strand, within Sama_0487 at 598.531 kb on + strand, within Sama_0487 at 598.532 kb on - strand, within Sama_0487 at 598.532 kb on - strand, within Sama_0487 at 598.532 kb on - strand, within Sama_0487 at 598.533 kb on + strand, within Sama_0487 at 598.534 kb on - strand, within Sama_0487 at 598.534 kb on - strand, within Sama_0487 at 598.534 kb on - strand, within Sama_0487 at 598.588 kb on + strand, within Sama_0487 at 598.588 kb on + strand, within Sama_0487 at 598.588 kb on + strand, within Sama_0487 at 598.589 kb on - strand, within Sama_0487 at 598.594 kb on + strand, within Sama_0487 at 598.594 kb on + strand, within Sama_0487 at 598.625 kb on + strand, within Sama_0487 at 598.674 kb on + strand at 598.674 kb on + strand at 598.674 kb on + strand at 598.674 kb on + strand at 598.674 kb on + strand at 598.674 kb on + strand at 598.674 kb on + strand at 598.674 kb on + strand at 598.674 kb on + strand at 598.675 kb on - strand at 598.675 kb on - strand at 598.675 kb on - strand at 598.675 kb on - strand at 598.675 kb on - strand at 598.675 kb on - strand at 598.675 kb on - strand at 598.682 kb on + strand at 598.682 kb on + strand at 598.682 kb on + strand at 598.682 kb on + strand at 598.682 kb on + strand at 598.682 kb on + strand at 598.682 kb on + strand at 598.683 kb on - strand at 598.683 kb on - strand at 598.683 kb on - strand at 598.683 kb on - strand at 598.683 kb on - strand at 598.683 kb on - strand at 598.683 kb on - strand at 598.689 kb on - strand at 598.714 kb on + strand at 598.714 kb on + strand at 598.714 kb on + strand at 598.715 kb on - strand at 598.727 kb on + strand at 598.727 kb on + strand at 598.727 kb on + strand at 598.727 kb on + strand at 598.728 kb on - strand at 598.728 kb on - strand at 598.728 kb on - strand at 598.728 kb on - strand at 598.728 kb on - strand at 598.755 kb on + strand at 598.755 kb on + strand at 598.756 kb on - strand at 598.756 kb on - strand at 598.757 kb on + strand at 598.757 kb on + strand at 598.757 kb on + strand at 598.757 kb on + strand at 598.757 kb on + strand at 598.757 kb on + strand at 598.757 kb on + strand at 598.757 kb on + strand at 598.757 kb on + strand at 598.757 kb on + strand at 598.757 kb on + strand at 598.758 kb on - strand at 598.758 kb on - strand at 598.758 kb on - strand at 598.758 kb on - strand at 598.758 kb on - strand at 598.758 kb on - strand at 598.758 kb on - strand at 598.758 kb on - strand at 598.758 kb on - strand at 598.800 kb on + strand at 598.800 kb on + strand at 598.808 kb on + strand at 598.858 kb on + strand at 598.859 kb on - strand at 598.864 kb on + strand at 598.864 kb on + strand at 598.864 kb on + strand at 598.865 kb on - strand at 598.865 kb on - strand at 598.873 kb on + strand at 598.873 kb on + strand at 598.873 kb on + strand at 598.873 kb on + strand at 598.874 kb on - strand at 598.874 kb on - strand at 598.874 kb on - strand at 598.874 kb on - strand at 598.874 kb on - strand at 598.874 kb on - strand at 598.874 kb on - strand at 598.937 kb on - strand at 598.937 kb on - strand at 598.945 kb on - strand at 598.971 kb on + strand at 598.972 kb on - strand at 598.972 kb on - strand at 598.995 kb on - strand at 599.013 kb on + strand at 599.013 kb on + strand at 599.013 kb on + strand at 599.094 kb on + strand, within Sama_0488
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose remove 596,473 + Sama_0485 0.50 -0.0 596,641 + Sama_0485 0.61 +0.5 596,642 - Sama_0485 0.61 -0.2 596,642 - Sama_0485 0.61 +1.4 596,647 + Sama_0485 0.62 +0.2 596,648 - Sama_0485 0.62 +0.5 596,648 - Sama_0485 0.62 -0.6 596,648 - Sama_0485 0.62 +0.1 596,667 + Sama_0485 0.63 +0.5 596,667 + Sama_0485 0.63 +0.5 596,668 - Sama_0485 0.63 -1.7 596,668 - Sama_0485 0.63 +0.4 596,722 + Sama_0485 0.67 +0.4 596,722 + Sama_0485 0.67 -0.9 596,722 + Sama_0485 0.67 -1.2 596,722 + Sama_0485 0.67 +0.1 596,722 + Sama_0485 0.67 +0.2 596,722 + Sama_0485 0.67 +0.3 596,723 - Sama_0485 0.67 +0.2 596,723 - Sama_0485 0.67 +0.6 596,723 - Sama_0485 0.67 +0.9 596,723 - Sama_0485 0.67 +0.5 596,723 - Sama_0485 0.67 -0.5 596,723 - Sama_0485 0.67 +1.7 596,723 - Sama_0485 0.67 -0.1 596,723 - Sama_0485 0.67 -0.1 596,723 - Sama_0485 0.67 +0.7 596,752 + Sama_0485 0.69 -0.3 596,752 + Sama_0485 0.69 +0.6 596,752 + Sama_0485 0.69 -0.3 596,752 + Sama_0485 0.69 +0.8 596,752 + Sama_0485 0.69 -0.9 596,752 + Sama_0485 0.69 -1.0 596,752 + Sama_0485 0.69 -0.3 596,752 + Sama_0485 0.69 -0.1 596,753 - Sama_0485 0.69 -1.1 596,753 - Sama_0485 0.69 +0.0 596,753 - Sama_0485 0.69 -0.5 596,753 - Sama_0485 0.69 -0.3 596,753 - Sama_0485 0.69 +0.5 596,753 - Sama_0485 0.69 +2.1 596,753 - Sama_0485 0.69 -0.7 596,753 - Sama_0485 0.69 -0.2 596,836 - Sama_0485 0.75 +0.0 596,838 + Sama_0485 0.75 +0.4 596,838 + Sama_0485 0.75 +0.5 596,839 - Sama_0485 0.75 -1.2 596,839 - Sama_0485 0.75 +1.1 596,919 + Sama_0485 0.80 -0.5 596,919 + Sama_0485 0.80 -0.5 596,920 - Sama_0485 0.80 -0.7 596,920 - Sama_0485 0.80 +2.3 596,920 - Sama_0485 0.80 +0.2 596,920 - Sama_0485 0.80 +0.2 596,944 + Sama_0485 0.82 -0.5 596,944 + Sama_0485 0.82 -0.5 596,944 + Sama_0485 0.82 -0.1 596,944 + Sama_0485 0.82 +0.3 596,944 + Sama_0485 0.82 -0.4 596,945 - Sama_0485 0.82 +0.5 596,945 - Sama_0485 0.82 -1.2 596,945 - Sama_0485 0.82 -0.5 596,945 - Sama_0485 0.82 +0.5 596,955 + Sama_0485 0.83 -0.2 596,972 + Sama_0485 0.84 -1.0 597,117 - +0.5 597,117 - -0.7 597,253 - -0.9 597,274 + +0.5 597,274 + +0.5 597,274 + +0.2 597,350 + -0.3 597,362 - +0.2 597,362 - -0.2 597,555 - Sama_0486 0.22 +0.1 597,555 - Sama_0486 0.22 -0.5 597,577 + Sama_0486 0.25 -0.2 597,581 + Sama_0486 0.26 +0.4 597,581 + Sama_0486 0.26 -0.2 597,581 + Sama_0486 0.26 +0.1 597,581 + Sama_0486 0.26 -2.3 597,581 + Sama_0486 0.26 -0.1 597,581 + Sama_0486 0.26 +0.7 597,582 - Sama_0486 0.26 -0.9 597,582 - Sama_0486 0.26 +0.3 597,582 - Sama_0486 0.26 -2.2 597,582 - Sama_0486 0.26 -0.5 597,582 - Sama_0486 0.26 +0.2 597,582 - Sama_0486 0.26 +0.9 597,615 + Sama_0486 0.31 -0.3 597,641 + Sama_0486 0.34 -0.1 597,641 + Sama_0486 0.34 +0.2 597,641 + Sama_0486 0.34 -1.2 597,642 - Sama_0486 0.35 -0.3 597,688 + Sama_0486 0.41 +0.7 597,688 + Sama_0486 0.41 +0.9 597,688 + Sama_0486 0.41 -0.9 597,689 - Sama_0486 0.41 -1.3 597,689 - Sama_0486 0.41 -0.2 597,694 + Sama_0486 0.42 -0.3 597,695 - Sama_0486 0.42 -0.7 597,722 + Sama_0486 0.46 +0.0 597,723 - Sama_0486 0.46 -0.5 597,723 - Sama_0486 0.46 +0.1 597,727 + Sama_0486 0.47 +0.0 597,727 + Sama_0486 0.47 -0.3 597,728 - Sama_0486 0.47 -0.4 597,756 + Sama_0486 0.51 -0.7 597,756 + Sama_0486 0.51 -0.4 597,785 + Sama_0486 0.55 +0.1 597,785 + Sama_0486 0.55 -0.8 597,785 + Sama_0486 0.55 -0.3 597,785 + Sama_0486 0.55 +0.4 597,785 + Sama_0486 0.55 +0.7 597,786 - Sama_0486 0.55 -0.6 597,786 - Sama_0486 0.55 -0.7 597,786 - Sama_0486 0.55 -0.3 597,829 - Sama_0486 0.61 -0.5 597,957 + Sama_0486 0.79 +0.4 597,958 - Sama_0486 0.79 +0.1 597,958 - Sama_0486 0.79 +0.4 597,965 - Sama_0486 0.80 -0.4 597,967 + Sama_0486 0.81 +0.1 597,967 + Sama_0486 0.81 -1.0 597,967 + Sama_0486 0.81 -0.3 597,968 - Sama_0486 0.81 -0.2 597,997 + Sama_0486 0.85 -0.5 597,997 + Sama_0486 0.85 +1.7 597,997 + Sama_0486 0.85 -0.6 597,997 + Sama_0486 0.85 -0.2 597,997 + Sama_0486 0.85 -0.2 597,997 + Sama_0486 0.85 -0.8 597,997 + Sama_0486 0.85 -1.7 597,997 + Sama_0486 0.85 -1.3 597,998 - Sama_0486 0.85 -1.5 597,998 - Sama_0486 0.85 -0.3 597,998 - Sama_0486 0.85 -0.7 597,998 - Sama_0486 0.85 +0.8 597,998 - Sama_0486 0.85 -0.4 597,998 - Sama_0486 0.85 -0.8 597,998 - Sama_0486 0.85 +0.1 597,998 - Sama_0486 0.85 -0.3 597,998 - Sama_0486 0.85 +0.5 597,998 - Sama_0486 0.85 -0.1 597,999 + Sama_0486 0.85 -2.2 597,999 + Sama_0486 0.85 -1.1 597,999 + Sama_0486 0.85 +0.4 597,999 + Sama_0486 0.85 +0.5 597,999 + Sama_0486 0.85 +0.6 598,042 + -1.5 598,042 + -0.1 598,042 + +0.0 598,042 + -1.1 598,042 + -1.0 598,043 - 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Or see this region's nucleotide sequence