Strain Fitness in Shewanella loihica PV-4 around Shew_3833

Experiment: Cephalothin 0.05 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 0.05 mg/ml
4,563,922	-		Shew_3832	0.84	+0.4
4,563,922	-		Shew_3832	0.84	-0.9
4,563,942	-		Shew_3832	0.85	+0.3
4,563,957	-		Shew_3832	0.86	+0.3
4,563,989	+		Shew_3832	0.88	-1.0
4,564,001	+		Shew_3832	0.88	+0.0
4,564,001	+		Shew_3832	0.88	-0.3
4,564,024	-		Shew_3832	0.89	-0.3
4,564,024	-		Shew_3832	0.89	-0.2
4,564,024	-		Shew_3832	0.89	+0.4
4,564,065	-				-0.3
4,564,121	+				-0.9
4,564,211	+				-0.1
4,564,214	-				-0.3
4,564,216	+				+0.2
4,564,253	+				-0.6
4,564,261	+				+1.3
4,564,261	+				+0.1
4,564,261	+				-0.3
4,564,261	+				+1.3
4,564,261	+				-0.3
4,564,268	+				+0.2
4,564,268	+				-0.4
4,564,269	-				+1.6
4,564,269	-				-0.1
4,564,275	-				-0.3
4,564,276	-				-0.4
4,564,335	-				+0.8
4,564,335	-				-0.4
4,564,336	+				+0.4
4,564,336	+				+0.9
4,564,336	+				+0.2
4,564,336	+				-0.5
4,564,344	-				-0.1
4,564,344	-				-0.6
4,564,344	-				+0.3
4,564,344	-				-0.3
4,564,346	+				-0.5
4,564,354	-				+1.7
4,564,354	-				-0.4
4,564,367	+				-0.9
4,564,367	+				-0.1
4,564,447	-				+0.2
4,564,464	+				-0.1
4,564,464	+				-1.1
4,564,464	+				-0.3
4,564,464	+				+0.3
4,564,464	+				-0.0
4,564,472	-				-1.4
4,564,472	-				-0.4
4,564,510	-				+0.1
4,564,525	-				-0.7
4,564,529	-				-0.4
4,564,566	-				+0.1
4,564,587	+				+0.6
4,564,587	+				-0.4
4,564,693	+				-0.2
4,564,727	+				-0.1
4,564,930	-		Shew_3833	0.14	-2.3
4,564,973	-		Shew_3833	0.28	-0.3
4,565,090	+		Shew_3833	0.66	+0.8
4,565,131	+		Shew_3833	0.79	-1.5
4,565,272	-		Shew_3834	0.67	+1.4
4,565,309	+				+0.6
4,565,338	-				-0.6
4,565,355	+				+0.1
4,565,363	-				-0.2
4,565,363	-				-0.6
4,565,422	+				-0.1
4,565,430	-				-0.3
4,565,432	-				+0.8
4,565,452	+				+0.5
4,565,500	-				+0.6
4,565,582	+				+0.3
4,565,649	+		Shew_3835	0.14	-0.3
4,565,649	+		Shew_3835	0.14	+0.9
4,565,649	+		Shew_3835	0.14	-0.0
4,565,649	+		Shew_3835	0.14	+0.4
4,565,649	+		Shew_3835	0.14	+1.2
4,565,657	-		Shew_3835	0.19	-0.6
4,565,657	-		Shew_3835	0.19	-0.0
4,565,657	-		Shew_3835	0.19	-0.1
4,565,672	-		Shew_3835	0.27	-0.9
4,565,677	-		Shew_3835	0.30	-0.6
4,565,724	+		Shew_3835	0.56	-0.3
4,565,745	+		Shew_3835	0.68	+0.7
4,565,745	+		Shew_3835	0.68	+0.0
4,565,753	-		Shew_3835	0.73	+0.3
4,565,826	+				-0.2
4,565,826	+				-0.1
4,565,826	+				+0.1
4,565,826	+				+0.1
4,565,826	+				-0.2
4,565,834	-				+0.4
4,565,866	-				+0.3
4,566,006	+		Shew_3836	0.41	+0.1
4,566,037	-		Shew_3836	0.50	+0.0
4,566,148	-		Shew_3836	0.81	+0.7
4,566,186	+				-0.1
4,566,186	+				+0.2
4,566,186	+				-0.2