Strain Fitness in Shewanella loihica PV-4 around Shew_3493

Experiment: Cephalothin 0.05 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 0.05 mg/ml
4,177,681	+				-0.3
4,177,681	+				+0.9
4,177,681	+				-1.6
4,177,681	+				+0.2
4,177,681	+				-0.5
4,177,681	+				+0.0
4,177,681	+				+0.8
4,177,681	+				-0.2
4,177,681	+				+0.1
4,177,681	+				+0.3
4,177,681	+				+0.1
4,177,681	+				-0.9
4,177,681	+				+0.6
4,177,683	+				+0.3
4,177,683	+				-0.4
4,177,683	+				+0.3
4,177,689	-				+0.1
4,177,689	-				+0.1
4,177,689	-				-0.9
4,177,689	-				-0.3
4,177,689	-				+0.0
4,177,689	-				-0.7
4,177,689	-				+0.4
4,177,689	-				-0.5
4,177,691	-				-0.5
4,177,691	+				+0.3
4,177,699	-				-0.2
4,177,699	-				+0.4
4,177,738	-				+0.2
4,177,763	+				-0.1
4,177,763	+				-0.1
4,177,763	+				+0.7
4,177,763	+				+0.6
4,177,763	+				-0.3
4,177,763	+				+0.4
4,177,763	+				-0.1
4,177,763	+				-0.1
4,177,771	-				-0.2
4,177,771	-				+0.1
4,177,771	-				-0.3
4,177,771	-				+0.7
4,177,771	-				+0.5
4,177,774	+				+0.3
4,177,783	+				-0.8
4,177,791	-				-0.8
4,177,820	+				+0.2
4,177,828	+				+0.1
4,177,830	-				+1.9
4,177,830	+				-0.1
4,177,831	+				+0.6
4,177,853	+				-0.0
4,177,853	+				+0.4
4,177,853	+				+0.1
4,177,853	+				-0.5
4,177,853	+				+0.0
4,177,853	+				+0.5
4,177,853	+				-1.8
4,177,860	+				-0.2
4,177,861	-				-0.1
4,177,861	-				+1.7
4,177,861	-				+0.8
4,177,861	-				+0.6
4,177,863	+				+2.4
4,177,863	+				+1.0
4,177,863	+				+0.3
4,177,865	+				+0.2
4,177,868	-				+0.1
4,177,871	-				+0.1
4,177,873	-				+0.0
4,177,873	-				-2.2
4,177,873	-				+0.5
4,177,895	+				-0.5
4,177,895	+				+0.0
4,177,902	+				-1.2
4,177,903	-				+0.2
4,177,959	+				-0.5
4,177,960	+				+0.7
4,177,968	-				-0.3
4,177,968	-				+0.4
4,177,968	-				+0.0
4,177,968	-				-0.2
4,177,968	-				+0.1
4,177,999	+				+0.3
4,178,002	-				-0.2
4,178,003	-				-0.1
4,178,003	-				-0.0
4,178,003	+				+1.8
4,178,010	+				-0.0
4,178,013	-		Shew_3492	0.10	-0.1
4,178,013	-		Shew_3492	0.10	-0.0
4,178,018	-		Shew_3492	0.11	+2.1
4,178,018	-		Shew_3492	0.11	-0.1
4,178,025	+		Shew_3492	0.12	+0.3
4,178,030	+		Shew_3492	0.13	-0.1
4,178,030	+		Shew_3492	0.13	-0.3
4,178,045	-		Shew_3492	0.16	-0.6
4,178,079	+		Shew_3492	0.21	-0.3
4,178,125	-		Shew_3492	0.29	-0.7
4,178,125	-		Shew_3492	0.29	+0.7
4,178,125	-		Shew_3492	0.29	+0.1
4,178,125	-		Shew_3492	0.29	+0.4
4,178,145	+		Shew_3492	0.32	+0.1
4,178,153	-		Shew_3492	0.33	-0.1
4,178,195	+		Shew_3492	0.40	+0.5
4,178,234	-		Shew_3492	0.47	+0.8
4,178,280	+		Shew_3492	0.54	-2.7
4,178,280	+		Shew_3492	0.54	+0.3
4,178,425	+		Shew_3492	0.78	+0.1
4,178,548	-				-0.2
4,178,557	-				-0.2
4,178,592	+				+0.1
4,178,595	-				-0.0
4,178,877	-		Shew_3493	0.15	-0.1
4,178,907	+		Shew_3493	0.18	-0.1
4,178,947	+		Shew_3493	0.21	-0.6
4,178,950	-		Shew_3493	0.21	+0.4
4,178,955	-		Shew_3493	0.21	+0.4
4,179,015	+		Shew_3493	0.26	+0.1
4,179,015	+		Shew_3493	0.26	+0.4
4,179,025	+		Shew_3493	0.27	-1.2
4,179,067	+		Shew_3493	0.30	+0.2
4,179,147	+		Shew_3493	0.36	+0.1
4,179,149	+		Shew_3493	0.36	-1.0
4,179,268	+		Shew_3493	0.46	-0.9
4,179,438	+		Shew_3493	0.59	+0.2
4,179,446	-		Shew_3493	0.59	+0.4
4,179,446	-		Shew_3493	0.59	-0.1
4,179,829	-		Shew_3493	0.89	-2.6
4,179,849	-				-0.3
4,179,871	+				-0.7
4,179,945	+				-1.0
4,179,945	+				+0.6
4,179,945	+				+0.5
4,179,953	-				-0.2
4,180,168	-				-0.1
4,180,168	-				+0.2
4,180,190	+				+0.1
4,180,226	+				+0.4
4,180,460	-		Shew_3494	0.29	-0.1
4,180,630	-		Shew_3494	0.45	+0.9
4,180,631	-		Shew_3494	0.45	+1.4
4,180,863	+		Shew_3494	0.67	+0.3
4,180,871	-		Shew_3494	0.68	+2.1
4,180,871	-		Shew_3494	0.68	+0.6
4,180,903	+		Shew_3494	0.71	+0.3