Strain Fitness in Shewanella loihica PV-4 around Shew_2192

Experiment: Cephalothin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2190 and Shew_2191 are separated by 82 nucleotidesShew_2191 and Shew_2192 are separated by 145 nucleotidesShew_2192 and Shew_2193 are separated by 65 nucleotides Shew_2190: Shew_2190 - hypothetical protein (RefSeq), at 2,549,548 to 2,550,396 _2190 Shew_2191: Shew_2191 - hypothetical protein (RefSeq), at 2,550,479 to 2,551,180 _2191 Shew_2192: Shew_2192 - hypothetical protein (RefSeq), at 2,551,326 to 2,551,697 _2192 Shew_2193: Shew_2193 - peptidase M22, glycoprotease (RefSeq), at 2,551,763 to 2,552,506 _2193 Position (kb) 2551 2552Strain fitness (log2 ratio) -1 0 1at 2550.651 kb on + strand, within Shew_2191at 2551.652 kb on + strand, within Shew_2192

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml
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2,550,651 + Shew_2191 0.25 +0.3
2,551,652 + Shew_2192 0.88 +0.5

Or see this region's nucleotide sequence