Strain Fitness in Shewanella loihica PV-4 around Shew_1852

Experiment: Cephalothin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1851 and Shew_1852 overlap by 4 nucleotidesShew_1852 and Shew_1853 are separated by 248 nucleotidesShew_1853 and Shew_1854 are separated by 418 nucleotides Shew_1851: Shew_1851 - RND family efflux transporter MFP subunit (RefSeq), at 2,128,155 to 2,129,240 _1851 Shew_1852: Shew_1852 - acriflavin resistance protein (RefSeq), at 2,129,237 to 2,132,365 _1852 Shew_1853: Shew_1853 - hypothetical protein (RefSeq), at 2,132,614 to 2,132,931 _1853 Shew_1854: Shew_1854 - hypothetical protein (RefSeq), at 2,133,350 to 2,134,720 _1854 Position (kb) 2129 2130 2131 2132 2133Strain fitness (log2 ratio) -3 -2 -1 0 1at 2128.571 kb on - strand, within Shew_1851at 2130.693 kb on + strand, within Shew_1852at 2130.741 kb on + strand, within Shew_1852at 2130.840 kb on + strand, within Shew_1852at 2131.350 kb on - strand, within Shew_1852at 2132.146 kb on + strandat 2132.575 kb on - strandat 2133.239 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml
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2,128,571 - Shew_1851 0.38 +0.3
2,130,693 + Shew_1852 0.47 -0.6
2,130,741 + Shew_1852 0.48 -0.6
2,130,840 + Shew_1852 0.51 -1.4
2,131,350 - Shew_1852 0.68 -3.2
2,132,146 + -0.3
2,132,575 - -0.2
2,133,239 + +0.7

Or see this region's nucleotide sequence