Strain Fitness in Shewanella loihica PV-4 around Shew_1631

Experiment: Cephalothin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1630 and Shew_1631 are separated by 75 nucleotidesShew_1631 and Shew_1632 are separated by 95 nucleotides Shew_1630: Shew_1630 - transcription-repair coupling factor (RefSeq), at 1,862,893 to 1,866,375 _1630 Shew_1631: Shew_1631 - hypothetical protein (RefSeq), at 1,866,451 to 1,867,032 _1631 Shew_1632: Shew_1632 - LolC/E family lipoprotein releasing system, transmembrane protein (RefSeq), at 1,867,128 to 1,868,360 _1632 Position (kb) 1866 1867 1868Strain fitness (log2 ratio) -2 -1 0 1at 1865.719 kb on + strand, within Shew_1630at 1866.327 kb on + strandat 1866.571 kb on + strand, within Shew_1631at 1866.625 kb on - strand, within Shew_1631at 1866.649 kb on + strand, within Shew_1631at 1866.973 kb on - strand, within Shew_1631

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml
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1,865,719 + Shew_1630 0.81 -2.5
1,866,327 + -1.8
1,866,571 + Shew_1631 0.21 +1.5
1,866,625 - Shew_1631 0.30 +0.9
1,866,649 + Shew_1631 0.34 +0.1
1,866,973 - Shew_1631 0.90 +0.5

Or see this region's nucleotide sequence