Experiment: Cephalothin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1389 and Shew_1390 overlap by 17 nucleotides Shew_1390 and Shew_1391 are separated by 7 nucleotides Shew_1391 and Shew_1392 are separated by 131 nucleotides Shew_1392 and Shew_1393 are separated by 30 nucleotides Shew_1393 and Shew_1394 overlap by 1 nucleotides
Shew_1389: Shew_1389 - cobyrinic acid a,c-diamide synthase (RefSeq), at 1,598,751 to 1,599,542
_1389
Shew_1390: Shew_1390 - CheW protein (RefSeq), at 1,599,526 to 1,600,515
_1390
Shew_1391: Shew_1391 - CheW protein (RefSeq), at 1,600,523 to 1,601,017
_1391
Shew_1392: Shew_1392 - hypothetical protein (RefSeq), at 1,601,149 to 1,601,556
_1392
Shew_1393: Shew_1393 - FlhB domain-containing protein (RefSeq), at 1,601,587 to 1,601,943
_1393
Shew_1394: Shew_1394 - hypothetical protein (RefSeq), at 1,601,943 to 1,604,096
_1394
Position (kb) 1600
1601
1602 Strain fitness (log2 ratio) -1
0
1 at 1599.527 kb on + strand at 1600.112 kb on - strand, within Shew_1390 at 1600.495 kb on + strand at 1600.584 kb on + strand, within Shew_1391 at 1600.874 kb on - strand, within Shew_1391 at 1601.011 kb on + strand at 1601.019 kb on - strand at 1601.204 kb on + strand, within Shew_1392 at 1601.505 kb on + strand, within Shew_1392 at 1601.513 kb on - strand, within Shew_1392 at 1601.513 kb on - strand, within Shew_1392 at 1601.585 kb on + strand at 1601.592 kb on - strand at 1601.854 kb on + strand, within Shew_1393
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml remove 1,599,527 + +0.6 1,600,112 - Shew_1390 0.59 -1.4 1,600,495 + +0.1 1,600,584 + Shew_1391 0.12 -1.3 1,600,874 - Shew_1391 0.71 -0.6 1,601,011 + -0.2 1,601,019 - +0.4 1,601,204 + Shew_1392 0.13 +0.3 1,601,505 + Shew_1392 0.87 +0.4 1,601,513 - Shew_1392 0.89 +0.7 1,601,513 - Shew_1392 0.89 +0.1 1,601,585 + -0.1 1,601,592 - +1.1 1,601,854 + Shew_1393 0.75 +0.3
Or see this region's nucleotide sequence