Experiment: Cephalothin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0851 and Shew_0852 are separated by 124 nucleotides Shew_0852 and Shew_0853 are separated by 399 nucleotides Shew_0853 and Shew_0854 are separated by 75 nucleotides Shew_0854 and Shew_0855 are separated by 30 nucleotides Shew_0855 and Shew_0856 are separated by 113 nucleotides
Shew_0851: Shew_0851 - phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq), at 974,065 to 975,117
_0851
Shew_0852: Shew_0852 - hypothetical protein (RefSeq), at 975,242 to 975,418
_0852
Shew_0853: Shew_0853 - ABC transporter-related protein (RefSeq), at 975,818 to 977,593
_0853
Shew_0854: Shew_0854 - hypothetical protein (RefSeq), at 977,669 to 977,926
_0854
Shew_0855: Shew_0855 - hypothetical protein (RefSeq), at 977,957 to 978,166
_0855
Shew_0856: Shew_0856 - phosphoglycerate mutase (RefSeq), at 978,280 to 978,816
_0856
Position (kb) 975
976
977
978 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 974.831 kb on - strand, within Shew_0851 at 974.941 kb on - strand, within Shew_0851 at 975.038 kb on - strand at 975.157 kb on + strand at 975.230 kb on + strand at 975.349 kb on - strand, within Shew_0852 at 975.372 kb on - strand, within Shew_0852 at 975.400 kb on + strand, within Shew_0852 at 975.468 kb on + strand at 975.477 kb on - strand at 975.478 kb on + strand at 975.478 kb on + strand at 975.478 kb on + strand at 975.478 kb on + strand at 975.478 kb on + strand at 975.478 kb on + strand at 975.486 kb on - strand at 975.486 kb on - strand at 975.662 kb on - strand at 975.734 kb on - strand at 975.996 kb on + strand, within Shew_0853 at 976.014 kb on - strand, within Shew_0853 at 976.062 kb on + strand, within Shew_0853 at 976.062 kb on + strand, within Shew_0853 at 976.070 kb on - strand, within Shew_0853 at 976.094 kb on - strand, within Shew_0853 at 976.496 kb on + strand, within Shew_0853 at 976.783 kb on + strand, within Shew_0853 at 976.822 kb on + strand, within Shew_0853 at 976.865 kb on + strand, within Shew_0853 at 976.873 kb on - strand, within Shew_0853 at 976.914 kb on + strand, within Shew_0853 at 976.914 kb on + strand, within Shew_0853 at 977.176 kb on + strand, within Shew_0853 at 977.748 kb on + strand, within Shew_0854 at 977.808 kb on - strand, within Shew_0854 at 978.259 kb on + strand at 978.434 kb on + strand, within Shew_0856 at 978.442 kb on - strand, within Shew_0856 at 978.473 kb on + strand, within Shew_0856
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml remove 974,831 - Shew_0851 0.73 -2.1 974,941 - Shew_0851 0.83 +0.1 975,038 - +0.4 975,157 + +0.0 975,230 + +0.0 975,349 - Shew_0852 0.60 -0.1 975,372 - Shew_0852 0.73 -0.6 975,400 + Shew_0852 0.89 -0.9 975,468 + -0.4 975,477 - +0.3 975,478 + -0.6 975,478 + -0.4 975,478 + -0.3 975,478 + -1.3 975,478 + -0.1 975,478 + -0.5 975,486 - -2.2 975,486 - +0.3 975,662 - +0.2 975,734 - +1.0 975,996 + Shew_0853 0.10 -1.1 976,014 - Shew_0853 0.11 -0.6 976,062 + Shew_0853 0.14 +0.1 976,062 + Shew_0853 0.14 -0.2 976,070 - Shew_0853 0.14 -0.3 976,094 - Shew_0853 0.16 +0.4 976,496 + Shew_0853 0.38 -0.4 976,783 + Shew_0853 0.54 -0.2 976,822 + Shew_0853 0.57 +0.6 976,865 + Shew_0853 0.59 +0.7 976,873 - Shew_0853 0.59 -0.3 976,914 + Shew_0853 0.62 -0.1 976,914 + Shew_0853 0.62 -1.2 977,176 + Shew_0853 0.76 -3.2 977,748 + Shew_0854 0.31 +0.1 977,808 - Shew_0854 0.54 +1.2 978,259 + +0.1 978,434 + Shew_0856 0.29 -0.4 978,442 - Shew_0856 0.30 +0.2 978,473 + Shew_0856 0.36 -0.8
Or see this region's nucleotide sequence